X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSliderPanel.java;h=4cbb985e067b22e7b01d46d82234708674fed48a;hb=797df64fa2a0a30773d0f48f5494d4155e5a8be3;hp=1a62fffee304c1f46c14ec316d1cbbacf6caffc4;hpb=813abcbd234db6ac665bf43ffc17759f33667015;p=jalview.git diff --git a/src/jalview/gui/SliderPanel.java b/src/jalview/gui/SliderPanel.java index 1a62fff..4cbb985 100755 --- a/src/jalview/gui/SliderPanel.java +++ b/src/jalview/gui/SliderPanel.java @@ -1,287 +1,372 @@ -/* - * Jalview - A Sequence Alignment Editor and Viewer - * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle - * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. - * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. - * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA - */ -package jalview.gui; - -import java.util.*; - -import java.awt.event.*; -import javax.swing.*; -import javax.swing.event.*; - -import jalview.datamodel.*; -import jalview.jbgui.*; -import jalview.schemes.*; - -public class SliderPanel - extends GSliderPanel -{ - static JInternalFrame conservationSlider; - static JInternalFrame PIDSlider; - AlignmentPanel ap; - boolean forConservation = true; - ColourSchemeI cs; - - public SliderPanel(AlignmentPanel ap, int value, boolean forConserve, - ColourSchemeI cs) - { - this.ap = ap; - this.cs = cs; - forConservation = forConserve; - undoButton.setVisible(false); - applyButton.setVisible(false); - - if (forConservation) - { - label.setText("Enter value to increase conservation visibility"); - slider.setMinimum(0); - slider.setMaximum(50); - } - else - { - label.setText("Enter % identity above which to colour residues"); - slider.setMinimum(0); - slider.setMaximum(100); - } - - slider.addChangeListener(new ChangeListener() - { - public void stateChanged(ChangeEvent evt) - { - valueField.setText(slider.getValue() + ""); - valueChanged(slider.getValue()); - } - }); - - slider.setValue(value); - valueField.setText(value + ""); - } - - public static int setConservationSlider(AlignmentPanel ap, - ColourSchemeI cs, String source) - { - SliderPanel sp = null; - ConservationColourScheme ccs = (ConservationColourScheme) cs; - - if (conservationSlider == null) - { - sp = new SliderPanel(ap, ccs.inc, true, cs); - conservationSlider = new JInternalFrame(); - conservationSlider.setContentPane(sp); - conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER); - } - else - { - sp = (SliderPanel) conservationSlider.getContentPane(); - sp.cs = cs; - } - - conservationSlider.setTitle("Conservation Colour Increment (" + - source + ")"); - - if (ap.av.alignment.getGroups() != null) - { - sp.setAllGroupsCheckEnabled(true); - } - else - { - sp.setAllGroupsCheckEnabled(false); - } - - return sp.getValue(); - } - - public static void showConservationSlider() - { - try - { - PIDSlider.setClosed(true); - PIDSlider = null; - } - catch (Exception ex) - { - } - - if (!conservationSlider.isVisible()) - { - Desktop.addInternalFrame(conservationSlider, - conservationSlider.getTitle(), 420, 90, false); - conservationSlider.addInternalFrameListener(new javax.swing.event. - InternalFrameAdapter() - { - public void internalFrameClosed( - javax.swing.event.InternalFrameEvent e) - { - conservationSlider = null; - } - }); - conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER); - } - } - - public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, - String source) - { - SliderPanel pid = null; - - int threshold = 50; - - if (cs instanceof ResidueColourScheme) - { - threshold = ( ( (ResidueColourScheme) cs).getThreshold()); - } - else if (cs instanceof ScoreColourScheme) - { - threshold = ( ( (ScoreColourScheme) cs).getThreshold()); - } - - if (PIDSlider == null) - { - pid = new SliderPanel(ap, threshold, false, cs); - PIDSlider = new JInternalFrame(); - PIDSlider.setContentPane(pid); - PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER); - } - else - { - pid = (SliderPanel) PIDSlider.getContentPane(); - pid.cs = cs; - } - - PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")"); - - if (ap.av.alignment.getGroups() != null) - { - pid.setAllGroupsCheckEnabled(true); - } - else - { - pid.setAllGroupsCheckEnabled(false); - } - - return pid.getValue(); - } - - public static void showPIDSlider() - { - try - { - conservationSlider.setClosed(true); - conservationSlider = null; - } - catch (Exception ex) - { - } - - if (!PIDSlider.isVisible()) - { - Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90, - false); - PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER); - PIDSlider.addInternalFrameListener(new javax.swing.event. - InternalFrameAdapter() - { - public void internalFrameClosed( - javax.swing.event.InternalFrameEvent e) - { - PIDSlider = null; - } - }); - PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER); - } - } - - public void valueChanged(int i) - { - if (cs == null) - { - return; - } - - ColourSchemeI toChange = null; - Vector allGroups = null; - int groupIndex = 0; - - if (allGroupsCheck.isSelected()) - { - allGroups = ap.av.alignment.getGroups(); - groupIndex = allGroups.size() - 1; - } - else - { - toChange = cs; - } - - while (groupIndex > -1) - { - if (allGroups != null) - { - toChange = ( (SequenceGroup) allGroups.get(groupIndex)).cs; - if(toChange==null) - { - groupIndex--; - continue; - } - } - - if (forConservation) - { - if (toChange instanceof ConservationColourScheme) - { - ( (ConservationColourScheme) toChange).inc = i; - } - } - else - { - ( (ResidueColourScheme) toChange).setThreshold(i); - } - - groupIndex--; - } - - ap.seqPanel.seqCanvas.repaint(); - } - - public void setAllGroupsCheckEnabled(boolean b) - { - allGroupsCheck.setEnabled(b); - } - - public void valueField_actionPerformed(ActionEvent e) - { - try - { - int i = Integer.parseInt(valueField.getText()); - slider.setValue(i); - } - catch (Exception ex) - { - valueField.setText(slider.getValue() + ""); - } - } - - public void setValue(int value) - { - slider.setValue(value); - } - - public int getValue() - { - return Integer.parseInt(valueField.getText()); - } -} +/* + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle + * + * This file is part of Jalview. + * + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + */ +package jalview.gui; + +import java.util.*; + +import java.awt.event.*; +import javax.swing.*; +import javax.swing.event.*; + +import jalview.datamodel.*; +import jalview.jbgui.*; +import jalview.schemes.*; + +/** + * DOCUMENT ME! + * + * @author $author$ + * @version $Revision$ + */ +public class SliderPanel extends GSliderPanel +{ + static JInternalFrame conservationSlider; + + static JInternalFrame PIDSlider; + + AlignmentPanel ap; + + boolean forConservation = true; + + ColourSchemeI cs; + + /** + * Creates a new SliderPanel object. + * + * @param ap + * DOCUMENT ME! + * @param value + * DOCUMENT ME! + * @param forConserve + * DOCUMENT ME! + * @param cs + * DOCUMENT ME! + */ + public SliderPanel(final AlignmentPanel ap, int value, + boolean forConserve, ColourSchemeI cs) + { + this.ap = ap; + this.cs = cs; + forConservation = forConserve; + undoButton.setVisible(false); + applyButton.setVisible(false); + + if (forConservation) + { + label.setText("Enter value to increase conservation visibility"); + slider.setMinimum(0); + slider.setMaximum(100); + } + else + { + label.setText("Enter % identity above which to colour residues"); + slider.setMinimum(0); + slider.setMaximum(100); + } + + slider.addChangeListener(new ChangeListener() + { + public void stateChanged(ChangeEvent evt) + { + valueField.setText(slider.getValue() + ""); + valueChanged(slider.getValue()); + } + }); + + slider.addMouseListener(new MouseAdapter() + { + public void mouseReleased(MouseEvent evt) + { + ap.paintAlignment(true); + } + }); + + slider.setValue(value); + valueField.setText(value + ""); + } + + /** + * DOCUMENT ME! + * + * @param ap + * DOCUMENT ME! + * @param cs + * DOCUMENT ME! + * @param source + * DOCUMENT ME! + * + * @return DOCUMENT ME! + */ + public static int setConservationSlider(AlignmentPanel ap, + ColourSchemeI cs, String source) + { + SliderPanel sp = null; + + if (conservationSlider == null) + { + sp = new SliderPanel(ap, cs.getConservationInc(), true, cs); + conservationSlider = new JInternalFrame(); + conservationSlider.setContentPane(sp); + conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER); + } + else + { + sp = (SliderPanel) conservationSlider.getContentPane(); + sp.cs = cs; + } + + conservationSlider.setTitle("Conservation Colour Increment (" + source + + ")"); + + if (ap.av.alignment.getGroups() != null) + { + sp.setAllGroupsCheckEnabled(true); + } + else + { + sp.setAllGroupsCheckEnabled(false); + } + + return sp.getValue(); + } + + /** + * DOCUMENT ME! + */ + public static void showConservationSlider() + { + try + { + PIDSlider.setClosed(true); + PIDSlider = null; + } catch (Exception ex) + { + } + + if (!conservationSlider.isVisible()) + { + Desktop.addInternalFrame(conservationSlider, + conservationSlider.getTitle(), 420, 90, false); + conservationSlider + .addInternalFrameListener(new javax.swing.event.InternalFrameAdapter() + { + public void internalFrameClosed( + javax.swing.event.InternalFrameEvent e) + { + conservationSlider = null; + } + }); + conservationSlider.setLayer(JLayeredPane.PALETTE_LAYER); + } + } + + /** + * DOCUMENT ME! + * + * @param ap + * DOCUMENT ME! + * @param cs + * DOCUMENT ME! + * @param source + * DOCUMENT ME! + * + * @return DOCUMENT ME! + */ + public static int setPIDSliderSource(AlignmentPanel ap, ColourSchemeI cs, + String source) + { + SliderPanel pid = null; + + int threshold = cs.getThreshold(); + + if (PIDSlider == null) + { + pid = new SliderPanel(ap, threshold, false, cs); + PIDSlider = new JInternalFrame(); + PIDSlider.setContentPane(pid); + PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER); + } + else + { + pid = (SliderPanel) PIDSlider.getContentPane(); + pid.cs = cs; + } + + PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")"); + + if (ap.av.alignment.getGroups() != null) + { + pid.setAllGroupsCheckEnabled(true); + } + else + { + pid.setAllGroupsCheckEnabled(false); + } + + return pid.getValue(); + } + + /** + * DOCUMENT ME! + */ + public static void showPIDSlider() + { + try + { + conservationSlider.setClosed(true); + conservationSlider = null; + } catch (Exception ex) + { + } + + if (!PIDSlider.isVisible()) + { + Desktop.addInternalFrame(PIDSlider, PIDSlider.getTitle(), 420, 90, + false); + PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER); + PIDSlider + .addInternalFrameListener(new javax.swing.event.InternalFrameAdapter() + { + public void internalFrameClosed( + javax.swing.event.InternalFrameEvent e) + { + PIDSlider = null; + } + }); + PIDSlider.setLayer(JLayeredPane.PALETTE_LAYER); + } + } + + /** + * DOCUMENT ME! + * + * @param i + * DOCUMENT ME! + */ + public void valueChanged(int i) + { + if (cs == null) + { + return; + } + + ColourSchemeI toChange = null; + Vector allGroups = null; + int groupIndex = 0; + + if (allGroupsCheck.isSelected()) + { + allGroups = ap.av.alignment.getGroups(); + groupIndex = allGroups.size() - 1; + } + else + { + toChange = cs; + } + + while (groupIndex > -1) + { + if (allGroups != null) + { + toChange = ((SequenceGroup) allGroups.get(groupIndex)).cs; + + if (toChange == null) + { + groupIndex--; + + continue; + } + } + + if (forConservation) + { + if (toChange.conservationApplied()) + { + toChange.setConservationInc(i); + } + } + else + { + toChange.setThreshold(i, ap.av.getIgnoreGapsConsensus()); + } + + groupIndex--; + } + + ap.seqPanel.seqCanvas.repaint(); + } + + /** + * DOCUMENT ME! + * + * @param b + * DOCUMENT ME! + */ + public void setAllGroupsCheckEnabled(boolean b) + { + allGroupsCheck.setEnabled(b); + } + + /** + * DOCUMENT ME! + * + * @param e + * DOCUMENT ME! + */ + public void valueField_actionPerformed(ActionEvent e) + { + try + { + int i = Integer.parseInt(valueField.getText()); + slider.setValue(i); + } catch (NumberFormatException ex) + { + valueField.setText(slider.getValue() + ""); + } + } + + /** + * DOCUMENT ME! + * + * @param value + * DOCUMENT ME! + */ + public void setValue(int value) + { + slider.setValue(value); + } + + /** + * DOCUMENT ME! + * + * @return DOCUMENT ME! + */ + public int getValue() + { + return Integer.parseInt(valueField.getText()); + } + + public void slider_mouseReleased(MouseEvent e) + { + if (ap.overviewPanel != null) + { + ap.overviewPanel.updateOverviewImage(); + } + } + +}