X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSliderPanel.java;h=83193dc0eb77716d5812a23acb1c77d582ebe9fa;hb=06ce849ffedc7ab10a3c54cda96b9a7dec58c136;hp=a20069956ed6851fedcbba7571d31b66405c1178;hpb=506d60f0e188723ddc91c26824b41ac7034df3fe;p=jalview.git
diff --git a/src/jalview/gui/SliderPanel.java b/src/jalview/gui/SliderPanel.java
index a200699..83193dc 100755
--- a/src/jalview/gui/SliderPanel.java
+++ b/src/jalview/gui/SliderPanel.java
@@ -1,32 +1,39 @@
/*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
- * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
+ * Copyright (C) $$Year-Rel$$ The Jalview Authors
*
- * This program is free software; you can redistribute it and/or
- * modify it under the terms of the GNU General Public License
- * as published by the Free Software Foundation; either version 2
- * of the License, or (at your option) any later version.
+ * This file is part of Jalview.
*
- * This program is distributed in the hope that it will be useful,
- * but WITHOUT ANY WARRANTY; without even the implied warranty of
- * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
- * GNU General Public License for more details.
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3
+ * of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
- * along with this program; if not, write to the Free Software
- * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
+ * along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.gui;
-import java.util.*;
+import jalview.datamodel.SequenceGroup;
+import jalview.jbgui.GSliderPanel;
+import jalview.schemes.ColourSchemeI;
+import jalview.util.MessageManager;
-import java.awt.event.*;
-import javax.swing.*;
-import javax.swing.event.*;
+import java.awt.event.MouseAdapter;
+import java.awt.event.MouseEvent;
+import java.beans.PropertyVetoException;
+import java.util.Iterator;
-import jalview.datamodel.*;
-import jalview.jbgui.*;
-import jalview.schemes.*;
+import javax.swing.JInternalFrame;
+import javax.swing.JLayeredPane;
+import javax.swing.event.ChangeEvent;
+import javax.swing.event.ChangeListener;
/**
* DOCUMENT ME!
@@ -50,13 +57,13 @@ public class SliderPanel extends GSliderPanel
* Creates a new SliderPanel object.
*
* @param ap
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param value
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param forConserve
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param cs
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public SliderPanel(final AlignmentPanel ap, int value,
boolean forConserve, ColourSchemeI cs)
@@ -69,19 +76,22 @@ public class SliderPanel extends GSliderPanel
if (forConservation)
{
- label.setText("Enter value to increase conservation visibility");
+ label.setText(MessageManager
+ .getString("label.enter_value_increase_conservation_visibility"));
slider.setMinimum(0);
slider.setMaximum(100);
}
else
{
- label.setText("Enter % identity above which to colour residues");
+ label.setText(MessageManager
+ .getString("label.enter_percentage_identity_above_which_colour_residues"));
slider.setMinimum(0);
slider.setMaximum(100);
}
slider.addChangeListener(new ChangeListener()
{
+ @Override
public void stateChanged(ChangeEvent evt)
{
valueField.setText(slider.getValue() + "");
@@ -91,6 +101,7 @@ public class SliderPanel extends GSliderPanel
slider.addMouseListener(new MouseAdapter()
{
+ @Override
public void mouseReleased(MouseEvent evt)
{
ap.paintAlignment(true);
@@ -105,11 +116,11 @@ public class SliderPanel extends GSliderPanel
* DOCUMENT ME!
*
* @param ap
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param cs
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param source
- * DOCUMENT ME!
+ * DOCUMENT ME!
*
* @return DOCUMENT ME!
*/
@@ -131,10 +142,12 @@ public class SliderPanel extends GSliderPanel
sp.cs = cs;
}
- conservationSlider.setTitle("Conservation Colour Increment (" + source
- + ")");
+ conservationSlider
+ .setTitle(MessageManager.formatMessage(
+ "label.conservation_colour_increment",
+ new String[] { source }));
- if (ap.av.alignment.getGroups() != null)
+ if (ap.av.getAlignment().getGroups() != null)
{
sp.setAllGroupsCheckEnabled(true);
}
@@ -147,6 +160,40 @@ public class SliderPanel extends GSliderPanel
}
/**
+ * Hides the PID slider panel if it is shown
+ */
+ public static void hidePIDSlider()
+ {
+ if (PIDSlider != null)
+ {
+ try
+ {
+ PIDSlider.setClosed(true);
+ PIDSlider = null;
+ } catch (PropertyVetoException ex)
+ {
+ }
+ }
+ }
+
+ /**
+ * Hides the conservation slider panel if it is shown
+ */
+ public static void hideConservationSlider()
+ {
+ if (conservationSlider != null)
+ {
+ try
+ {
+ conservationSlider.setClosed(true);
+ conservationSlider = null;
+ } catch (PropertyVetoException ex)
+ {
+ }
+ }
+ }
+
+ /**
* DOCUMENT ME!
*/
public static void showConservationSlider()
@@ -161,11 +208,12 @@ public class SliderPanel extends GSliderPanel
if (!conservationSlider.isVisible())
{
- Desktop.addInternalFrame(conservationSlider, conservationSlider
- .getTitle(), 420, 90, false);
+ Desktop.addInternalFrame(conservationSlider,
+ conservationSlider.getTitle(), 420, 90, false);
conservationSlider
.addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
{
+ @Override
public void internalFrameClosed(
javax.swing.event.InternalFrameEvent e)
{
@@ -180,11 +228,11 @@ public class SliderPanel extends GSliderPanel
* DOCUMENT ME!
*
* @param ap
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param cs
- * DOCUMENT ME!
+ * DOCUMENT ME!
* @param source
- * DOCUMENT ME!
+ * DOCUMENT ME!
*
* @return DOCUMENT ME!
*/
@@ -208,9 +256,12 @@ public class SliderPanel extends GSliderPanel
pid.cs = cs;
}
- PIDSlider.setTitle("Percentage Identity Threshold (" + source + ")");
+ PIDSlider
+ .setTitle(MessageManager.formatMessage(
+ "label.percentage_identity_threshold",
+ new String[] { source }));
- if (ap.av.alignment.getGroups() != null)
+ if (ap.av.getAlignment().getGroups() != null)
{
pid.setAllGroupsCheckEnabled(true);
}
@@ -243,6 +294,7 @@ public class SliderPanel extends GSliderPanel
PIDSlider
.addInternalFrameListener(new javax.swing.event.InternalFrameAdapter()
{
+ @Override
public void internalFrameClosed(
javax.swing.event.InternalFrameEvent e)
{
@@ -257,7 +309,7 @@ public class SliderPanel extends GSliderPanel
* DOCUMENT ME!
*
* @param i
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void valueChanged(int i)
{
@@ -266,57 +318,46 @@ public class SliderPanel extends GSliderPanel
return;
}
- ColourSchemeI toChange = null;
- Vector allGroups = null;
- int groupIndex = 0;
+ ColourSchemeI toChange = cs;
+ Iterator allGroups = null;
if (allGroupsCheck.isSelected())
{
- allGroups = ap.av.alignment.getGroups();
- groupIndex = allGroups.size() - 1;
- }
- else
- {
- toChange = cs;
+ allGroups = ap.av.getAlignment().getGroups().listIterator();
}
- while (groupIndex > -1)
+ while (toChange != null)
{
- if (allGroups != null)
+ if (forConservation)
{
- toChange = ((SequenceGroup) allGroups.get(groupIndex)).cs;
-
- if (toChange == null)
- {
- groupIndex--;
-
- continue;
- }
+ toChange.setConservationInc(i);
}
-
- if (forConservation)
+ else
{
- if (toChange.conservationApplied())
+ toChange.setThreshold(i, ap.av.isIgnoreGapsConsensus());
+ }
+ if (allGroups != null && allGroups.hasNext())
+ {
+ while ((toChange = allGroups.next().cs) == null
+ && allGroups.hasNext())
{
- toChange.setConservationInc(i);
+ ;
}
}
else
{
- toChange.setThreshold(i, ap.av.getIgnoreGapsConsensus());
+ toChange = null;
}
-
- groupIndex--;
}
- ap.seqPanel.seqCanvas.repaint();
+ ap.getSeqPanel().seqCanvas.repaint();
}
/**
* DOCUMENT ME!
*
* @param b
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void setAllGroupsCheckEnabled(boolean b)
{
@@ -326,26 +367,8 @@ public class SliderPanel extends GSliderPanel
/**
* DOCUMENT ME!
*
- * @param e
- * DOCUMENT ME!
- */
- public void valueField_actionPerformed(ActionEvent e)
- {
- try
- {
- int i = Integer.parseInt(valueField.getText());
- slider.setValue(i);
- } catch (NumberFormatException ex)
- {
- valueField.setText(slider.getValue() + "");
- }
- }
-
- /**
- * DOCUMENT ME!
- *
* @param value
- * DOCUMENT ME!
+ * DOCUMENT ME!
*/
public void setValue(int value)
{
@@ -362,6 +385,7 @@ public class SliderPanel extends GSliderPanel
return Integer.parseInt(valueField.getText());
}
+ @Override
public void slider_mouseReleased(MouseEvent e)
{
if (ap.overviewPanel != null)