X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FSplitFrame.java;h=cab4d271050b086306b1be067d3dcef37fccfee3;hb=e6139c0f78da30cdf0dabb986706f3a2110c02fc;hp=bfb3719df02f5215afe7730583efb59dbc04185a;hpb=be7d3d5e0d85c7c8dcfdf35a6240da9c438ef9bb;p=jalview.git

diff --git a/src/jalview/gui/SplitFrame.java b/src/jalview/gui/SplitFrame.java
index bfb3719..cab4d27 100644
--- a/src/jalview/gui/SplitFrame.java
+++ b/src/jalview/gui/SplitFrame.java
@@ -392,6 +392,8 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
   {
     AlignFrame topFrame = (AlignFrame) getTopFrame();
     AlignFrame bottomFrame = (AlignFrame) getBottomFrame();
+    final boolean scaleProteinAsCdna = topFrame.viewport
+            .isScaleProteinAsCdna();
 
     AlignmentPanel newTopPanel = topFrame.newView(null, true);
     AlignmentPanel newBottomPanel = bottomFrame.newView(null, true);
@@ -410,6 +412,19 @@ public class SplitFrame extends GSplitFrame implements SplitContainerI
     newBottomPanel.av.viewName = newTopPanel.av.viewName;
     newTopPanel.av.setCodingComplement(newBottomPanel.av);
 
+    /*
+     * These lines can be removed once scaleProteinAsCdna is added to element
+     * Viewport in jalview.xsd, as Jalview2XML.copyAlignPanel will then take
+     * care of it
+     */
+    newTopPanel.av.setScaleProteinAsCdna(scaleProteinAsCdna);
+    newBottomPanel.av.setScaleProteinAsCdna(scaleProteinAsCdna);
+
+    /*
+     * Line up id labels etc
+     */
+    adjustLayout();
+
     final StructureSelectionManager ssm = StructureSelectionManager
             .getStructureSelectionManager(Desktop.instance);
     ssm.addCommandListener(newTopPanel.av);