X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FStructureViewer.java;h=5effa1a9c19ef37feb8d4aaaf719887c66ad8106;hb=57738a1f3c19b1c3a00bd3ac5108f8cd0af32f99;hp=40f9ae1cca5bbd9dc444011c808a4a474a18aeee;hpb=a1984b1c8c273ed33c7ce9283039f4027dcae2de;p=jalview.git

diff --git a/src/jalview/gui/StructureViewer.java b/src/jalview/gui/StructureViewer.java
index 40f9ae1..5effa1a 100644
--- a/src/jalview/gui/StructureViewer.java
+++ b/src/jalview/gui/StructureViewer.java
@@ -29,6 +29,7 @@ import java.util.Map.Entry;
 
 import jalview.api.structures.JalviewStructureDisplayI;
 import jalview.bin.Cache;
+import jalview.bin.Console;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
 import jalview.datamodel.StructureViewerModel;
@@ -63,7 +64,8 @@ public class StructureViewer
    * 
    * @param structureSelectionManager
    */
-  public StructureViewer(StructureSelectionManager structureSelectionManager)
+  public StructureViewer(
+          StructureSelectionManager structureSelectionManager)
   {
     ssm = structureSelectionManager;
   }
@@ -80,7 +82,6 @@ public class StructureViewer
     return sv;
   }
 
-  
   @Override
   public String toString()
   {
@@ -90,9 +91,10 @@ public class StructureViewer
     }
     return "New View";
   }
+
   /**
    * 
-   * @return ViewerType for currently configured structure viewer 
+   * @return ViewerType for currently configured structure viewer
    */
   public static ViewerType getViewerType()
   {
@@ -130,10 +132,10 @@ public class StructureViewer
 
     Map<PDBEntry, SequenceI[]> seqsForPdbs = getSequencesForPdbs(pdbs,
             seqs);
-    PDBEntry[] pdbsForFile = seqsForPdbs.keySet().toArray(
-            new PDBEntry[seqsForPdbs.size()]);
-    SequenceI[][] theSeqs = seqsForPdbs.values().toArray(
-            new SequenceI[seqsForPdbs.size()][]);
+    PDBEntry[] pdbsForFile = seqsForPdbs.keySet()
+            .toArray(new PDBEntry[seqsForPdbs.size()]);
+    SequenceI[][] theSeqs = seqsForPdbs.values()
+            .toArray(new SequenceI[seqsForPdbs.size()][]);
     if (sview != null)
     {
       sview.setAlignAddedStructures(superposeAdded);
@@ -180,7 +182,7 @@ public class StructureViewer
     }
     else
     {
-      Cache.error(UNKNOWN_VIEWER_TYPE + getViewerType().toString());
+      Console.error(UNKNOWN_VIEWER_TYPE + getViewerType().toString());
     }
     return sview;
   }
@@ -328,7 +330,7 @@ public class StructureViewer
     }
     else
     {
-      Cache.error(UNKNOWN_VIEWER_TYPE + getViewerType().toString());
+      Console.error(UNKNOWN_VIEWER_TYPE + getViewerType().toString());
     }
     return sview;
   }
@@ -366,12 +368,11 @@ public class StructureViewer
       viewer = new PymolViewer(viewerData, alignPanel, sessionFile, vid);
       break;
     default:
-      Cache.error(UNKNOWN_VIEWER_TYPE + type.toString());
+      Console.error(UNKNOWN_VIEWER_TYPE + type.toString());
     }
     return viewer;
   }
 
-
   public boolean isBusy()
   {
     if (sview != null)