X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FStructureViewerBase.java;h=31c20ed098d55338973deabb3724e2a01d5f000c;hb=56e67e558885f901e565620b3710e42909a68d29;hp=07665e8ca6430e8f61de76c1774064ea8c5ccaca;hpb=75db7abd6c89a9465861dc7604faca4893c52101;p=jalview.git

diff --git a/src/jalview/gui/StructureViewerBase.java b/src/jalview/gui/StructureViewerBase.java
index 07665e8..31c20ed 100644
--- a/src/jalview/gui/StructureViewerBase.java
+++ b/src/jalview/gui/StructureViewerBase.java
@@ -470,7 +470,9 @@ public abstract class StructureViewerBase extends GStructureViewer
     if (apanel.getSeqPanel().seqCanvas.fr != null)
     {
       apanel.getSeqPanel().seqCanvas.fr.featuresAdded();
-      apanel.paintAlignment(true);
+      // note - we don't do a refresh for structure here because we do it
+      // explicitly for all panels later on
+      apanel.paintAlignment(true, false);
     }
 
     /*