X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FStructureViewerBase.java;h=8290dd935163f06bfee89f14eb6689437cbfe452;hb=cb8e52fbbc5f725e3f7f48c672cdddb0690bd978;hp=30ecc80288ab31383b77d90c7132906ea55a5f6a;hpb=b52f1c317e9171563a69bcf5ef41ad29e9c4da49;p=jalview.git

diff --git a/src/jalview/gui/StructureViewerBase.java b/src/jalview/gui/StructureViewerBase.java
index 30ecc80..8290dd9 100644
--- a/src/jalview/gui/StructureViewerBase.java
+++ b/src/jalview/gui/StructureViewerBase.java
@@ -47,6 +47,7 @@ import javax.swing.event.MenuListener;
 
 import jalview.api.AlignmentViewPanel;
 import jalview.bin.Cache;
+import jalview.bin.Console;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.PDBEntry;
 import jalview.datamodel.SequenceI;
@@ -814,7 +815,7 @@ public abstract class StructureViewerBase extends GStructureViewer
       {
         sp.append("'" + alignPanel.getViewName() + "' ");
       }
-      Cache.log.info("Couldn't align structures with the " + sp.toString()
+      Console.info("Couldn't align structures with the " + sp.toString()
               + "associated alignment panels.", e);
     }
     return reply;
@@ -1156,7 +1157,7 @@ public abstract class StructureViewerBase extends GStructureViewer
     {
       if (afclient.isValidReference(pdbid))
       {
-        pdbseq = afclient.getSequenceRecords(pdbid);
+        pdbseq = afclient.getSequenceRecords(pdbid,processingEntry.getRetrievalUrl());
       } else {
           if (processingEntry.hasRetrievalUrl())
           {