X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FTextColourChooser.java;h=53e2deef647887ac138a8bda1fcd58d5d2c0de9b;hb=refs%2Fheads%2Ffeatures%2FJAL-2773_dontalwaysrecolourstructureonrepaintofoverview;hp=3986561e0137af147e6ab2a2602dfb01b930b063;hpb=98558735e9208afa98bb155bd5350ad0a680ca24;p=jalview.git

diff --git a/src/jalview/gui/TextColourChooser.java b/src/jalview/gui/TextColourChooser.java
index 3986561..53e2dee 100644
--- a/src/jalview/gui/TextColourChooser.java
+++ b/src/jalview/gui/TextColourChooser.java
@@ -184,9 +184,9 @@ public class TextColourChooser
    */
   protected void saveInitialSettings()
   {
-    groupColour1 = new HashMap<SequenceGroup, Color>();
-    groupColour2 = new HashMap<SequenceGroup, Color>();
-    groupThreshold = new HashMap<SequenceGroup, Integer>();
+    groupColour1 = new HashMap<>();
+    groupColour2 = new HashMap<>();
+    groupThreshold = new HashMap<>();
 
     if (sg == null)
     {
@@ -237,7 +237,7 @@ public class TextColourChooser
       sg.textColour = col;
     }
 
-    ap.paintAlignment(true);
+    ap.paintAlignment(false, false);
   }
 
   void colour2Changed(Color col)
@@ -255,7 +255,7 @@ public class TextColourChooser
       sg.textColour2 = col;
     }
 
-    ap.paintAlignment(true);
+    ap.paintAlignment(false, false);
   }
 
   void thresholdChanged(int value)
@@ -273,7 +273,7 @@ public class TextColourChooser
       sg.thresholdTextColour = value;
     }
 
-    ap.paintAlignment(true);
+    ap.paintAlignment(false, false);
   }
 
   void setGroupTextColour()