X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FTreeCanvas.java;fp=src%2Fjalview%2Fgui%2FTreeCanvas.java;h=f208d7713d65b58c40158e8374e5ef437456673a;hb=b57a02c25e335d033c97f8a6bacd6b54f62bd2b6;hp=7d413f694cad5070a2d4af9865136d208e96b859;hpb=1cc81e06ac2faa5ee4b8879e9fa019956e34259f;p=jalview.git

diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java
index 7d413f6..f208d77 100755
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -903,18 +903,18 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
         }
         else
         {
-          cs = ColourSchemeProperty.getColour(sg, ColourSchemeProperty.getColourName(av
-                  .getGlobalColourScheme()));
+          cs = ColourSchemeProperty.getColour(sg, ColourSchemeProperty
+                  .getColourName(av.getGlobalColourScheme()));
         }
         // cs is null if shading is an annotationColourGradient
-        if (cs!=null)
+        if (cs != null)
         {
           cs.setThreshold(av.getGlobalColourScheme().getThreshold(),
                   av.getIgnoreGapsConsensus());
         }
       }
-      sg.cs=cs;
-//      sg.recalcConservation();
+      sg.cs = cs;
+      // sg.recalcConservation();
       sg.setName("JTreeGroup:" + sg.hashCode());
       sg.setIdColour(col);
       for (int a = 0; a < aps.length; a++)
@@ -938,7 +938,8 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
     for (int a = 0; a < aps.length; a++)
     {
       aps[a].updateAnnotation();
-      // TODO: JAL-868 - need to ensure view colour change message is broadcast to any Jmols listening in
+      // TODO: JAL-868 - need to ensure view colour change message is broadcast
+      // to any Jmols listening in
     }
 
   }