X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FTreeCanvas.java;h=1628f58d1c911e86b752e51252897843b2c850e4;hb=df9b85c1cf39894039018499fe802406cc37f209;hp=944aa73404b44cfc33984b6e847d6491da506ece;hpb=bf2bf43c980b18a26b724d2a2d51dddc1a79a185;p=jalview.git

diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java
index 944aa73..1628f58 100755
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -228,7 +228,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
             SequenceGroup selected = av.getSelectionGroup();
 
             if ((selected != null) &&
-                    selected.sequences.contains((SequenceI) node.element()))
+                    selected.getSequences(false).contains((SequenceI) node.element()))
             {
                 g.setColor(Color.gray);
 
@@ -758,7 +758,8 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
                        && av.getGlobalColourScheme().conservationApplied())
                     {
                         Conservation c = new Conservation("Group",
-                                ResidueProperties.propHash, 3, sg.sequences,
+                                ResidueProperties.propHash, 3,
+                                sg.getSequences(false),
                                 sg.getStartRes(), sg.getEndRes());
 
                         c.calculate();