X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FTreeCanvas.java;h=600683fc841a36f8e3329ffc3da6a43fec9bce90;hb=ac07859006686a2c62bcf57b24742eb610bc46f0;hp=9435716e3cf9c63f75416d81cb5c5ece259a8dfe;hpb=ee2fab02e829035b825cea4046266a6994978b96;p=jalview.git

diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java
index 9435716..600683f 100755
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -27,7 +27,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, Print
   int offx = 20;
   int offy = 20;
 
-  int threshold;
+  float threshold;
 
   String longestName;
   int labelLength=-1;
@@ -342,8 +342,14 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, Print
 
     if (threshold != 0)
     {
+      if(av.getCurrentTree() == tree)
         g.setColor(Color.red);
-        g.drawLine(threshold,0,threshold,getHeight());
+      else
+        g.setColor(Color.gray);
+
+        int x = (int)(    threshold * (float)(getWidth()-labelLength - 2*offx) +offx   ) ;
+
+        g.drawLine(x,0,x,getHeight());
     }
 
     scrollPane.revalidate();
@@ -381,6 +387,9 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, Print
   }
 
   public void mousePressed(MouseEvent e) {
+
+      av.setCurrentTree(tree);
+
       int x = e.getX();
       int y = e.getY();
 
@@ -401,10 +410,10 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, Print
           // Find threshold
 
           if (tree.getMaxHeight() != 0) {
-              float fthreshold = (float)(x - offx)/(float)(getWidth()-labelLength - 2*offx);
-              this.threshold = x;
+              threshold = (float)(x - offx)/(float)(getWidth()-labelLength - 2*offx);
+
               tree.getGroups().removeAllElements();
-              tree.groupNodes(tree.getTopNode(),fthreshold);
+              tree.groupNodes(tree.getTopNode(),threshold);
               setColor(tree.getTopNode(),Color.black);
 
               av.setSelectionGroup(null);
@@ -438,7 +447,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable, Print
                                                       sg.getEndRes());
 
                     c.calculate();
-                    c.verdict(false, 100);
+                    c.verdict(false, av.ConsPercGaps);
                     ccs = new ConservationColourScheme(c, ccs.cs);
 
                     sg.cs = ccs;