X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FTreeCanvas.java;h=6617277d2500901e3fa79eadbb595b87b3da0124;hb=4a3def9f59cefe629c9a33d87483283aee085928;hp=baaec82a2c4cc26a208f765640df99a1faf3cf04;hpb=080fea8156db2a9fe6126d353e02f0a51942b231;p=jalview.git

diff --git a/src/jalview/gui/TreeCanvas.java b/src/jalview/gui/TreeCanvas.java
index baaec82..6617277 100755
--- a/src/jalview/gui/TreeCanvas.java
+++ b/src/jalview/gui/TreeCanvas.java
@@ -381,7 +381,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
   {
     for (Entry<Object, Rectangle> entry : nameHash.entrySet())
     {
-      Rectangle rect = (Rectangle) nameHash.get(entry.getValue());
+      Rectangle rect = entry.getValue();
 
       if ((x >= rect.x) && (x <= (rect.x + rect.width)) && (y >= rect.y)
               && (y <= (rect.y + rect.height)))
@@ -459,8 +459,8 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
     if ((node.left() == null) && (node.right() == null))
     {
       double height = node.height;
-//      double dist = node.dist;
-//      int xstart = (int) ((height - dist) * wscale) + offx;
+      // double dist = node.dist;
+      // int xstart = (int) ((height - dist) * wscale) + offx;
       int xend = (int) (height * wscale) + offx;
 
       int ypos = (int) (node.ycount * chunk) + offy;
@@ -525,7 +525,7 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
    */
   void startPrinting()
   {
-    Thread thread = new Thread(this);
+    Thread thread = new Thread(this, "PrintTreeCanvas");
     thread.start();
   }
 
@@ -826,7 +826,8 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
   void chooseSubtreeColour()
   {
     String ttl = MessageManager.getString("label.select_subtree_colour");
-    ColourChooserListener listener = new ColourChooserListener() {
+    ColourChooserListener listener = new ColourChooserListener()
+    {
       @Override
       public void colourSelected(Color c)
       {
@@ -835,7 +836,8 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
         repaint();
       }
     };
-    JalviewColourChooser.showColourChooser(this, ttl,  highlightNode.color, listener);
+    JalviewColourChooser.showColourChooser(this, ttl, highlightNode.color,
+            listener);
   }
 
   @Override
@@ -914,7 +916,8 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
     if (ob instanceof SequenceI)
     {
       treeSelectionChanged((Sequence) ob);
-      PaintRefresher.Refresh(tp, getAssociatedPanel().av.getSequenceSetId());
+      PaintRefresher.Refresh(tp,
+              getAssociatedPanel().av.getSequenceSetId());
       repaint();
       av.sendSelection();
       return;
@@ -960,7 +963,8 @@ public class TreeCanvas extends JPanel implements MouseListener, Runnable,
         }
       }
 
-      PaintRefresher.Refresh(tp, getAssociatedPanel().av.getSequenceSetId());
+      PaintRefresher.Refresh(tp,
+              getAssociatedPanel().av.getSequenceSetId());
       repaint();
     }