X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FTreePanel.java;h=1b01606251cab1d3a8dffdd4fa9652cb8f360e63;hb=52fd681e0f239e20df19fd7560d4b999104ba222;hp=04be0fd87742a3cb3cee8fc42fbddd7317da3230;hpb=cc6d3409ba4055800f8945e1a984899327c66da4;p=jalview.git

diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java
index 04be0fd..1b01606 100755
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -56,6 +56,7 @@ public class TreePanel extends GTreePanel
     int end;
     TreeCanvas treeCanvas;
     NJTree tree;
+    AlignViewport av;
 
     /**
      * Creates a new TreePanel object.
@@ -134,6 +135,8 @@ public class TreePanel extends GTreePanel
         }
       });
 
+      this.av = av;
+
 
       TreeLoader tl = new TreeLoader(newTree);
       tl.start();
@@ -169,6 +172,8 @@ public class TreePanel extends GTreePanel
 
         treeCanvas.repaint();
 
+        av.setCurrentTree(tree);
+
       }
     }
 
@@ -236,7 +241,7 @@ public class TreePanel extends GTreePanel
         Desktop.addInternalFrame(cap, buffer.toString(), 500, 100);
 
         jalview.io.NewickFile fout = new jalview.io.NewickFile(tree.getTopNode());
-        cap.setText(fout.print(false, true));
+        cap.setText(fout.print(tree.isHasBootstrap(), tree.isHasDistances(), tree.isHasRootDistance()));
     }
 
     /**
@@ -263,7 +268,7 @@ public class TreePanel extends GTreePanel
             try
             {
                 jalview.io.NewickFile fout = new jalview.io.NewickFile(tree.getTopNode());
-                String output = fout.print(false, true); // distances only
+                String output = fout.print(tree.isHasBootstrap(), tree.isHasDistances(), tree.isHasRootDistance());
                 java.io.PrintWriter out = new java.io.PrintWriter(new java.io.FileWriter(
                             choice));
                 out.println(output);