X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FTreePanel.java;h=9c1e42eab6030bc279679da282b096d2acd97c68;hb=03e082a4dba4e1ba9b6929ca3d3f8055f9224fc1;hp=fea470428a31c7fd549e5ccca435ed0adae848b0;hpb=cd092aaf2104ed3651aa9ee80d0c24bb57dfae27;p=jalview.git

diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java
index fea4704..9c1e42e 100755
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -38,7 +38,6 @@ import java.util.*;
 
 import javax.imageio.*;
 
-import javax.swing.*;
 import java.beans.PropertyChangeEvent;
 
 
@@ -94,6 +93,11 @@ public class TreePanel extends GTreePanel
       initTreePanel(av, seqVector, type, pwtype, 0, seqVector.size(), newtree);
     }
 
+    public AlignmentI getAlignment()
+    {
+      return treeCanvas.av.getAlignment();
+    }
+
 
     void initTreePanel(AlignViewport av, Vector seqVector, String type,
                        String pwtype, int s, int e, NewickFile newTree)
@@ -232,7 +236,7 @@ public class TreePanel extends GTreePanel
         Desktop.addInternalFrame(cap, buffer.toString(), 500, 100);
 
         jalview.io.NewickFile fout = new jalview.io.NewickFile(tree.getTopNode());
-        cap.setText(fout.print(false, true));
+        cap.setText(fout.print(tree.isHasBootstrap(), tree.isHasDistances(), tree.isHasRootDistance()));
     }
 
     /**
@@ -259,7 +263,7 @@ public class TreePanel extends GTreePanel
             try
             {
                 jalview.io.NewickFile fout = new jalview.io.NewickFile(tree.getTopNode());
-                String output = fout.print(false, true); // distances only
+                String output = fout.print(tree.isHasBootstrap(), tree.isHasDistances(), tree.isHasRootDistance());
                 java.io.PrintWriter out = new java.io.PrintWriter(new java.io.FileWriter(
                             choice));
                 out.println(output);