X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FTreePanel.java;h=f636257634463dad9d239241173bcdc313a9b0a9;hb=91c5d2144a780716e755e99882acffe46b40f18f;hp=a25b01dee265c8f7c6130dd32b3ab2ec13544e8e;hpb=7c05496d1da22f21ce5ae1a199afb9b16c8777ea;p=jalview.git

diff --git a/src/jalview/gui/TreePanel.java b/src/jalview/gui/TreePanel.java
index a25b01d..f636257 100755
--- a/src/jalview/gui/TreePanel.java
+++ b/src/jalview/gui/TreePanel.java
@@ -84,9 +84,9 @@ public class TreePanel extends GTreePanel
      * @param pwtype DOCUMENT ME!
      */
     public TreePanel(AlignViewport av,
-                     NewickFile newtree,
                      String type,
-                     String pwtype)
+                     String pwtype,
+                     NewickFile newtree)
     {
       super();
       initTreePanel(av, type, pwtype, newtree);
@@ -163,7 +163,7 @@ public class TreePanel extends GTreePanel
           String [] seqStrings = null;
           if (av.hasHiddenColumns)
           {
-            seqStrings = av.getSelectionAsString();
+            seqStrings = av.getViewAsString(true);
           }
 
           if(av.getSelectionGroup()==null)