X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FUserDefinedColours.java;h=3da159f078d40aa25520f067d9297be2d5b60f07;hb=dd81a4ab9d1ffc6168e7a041c7d488db37298cce;hp=37824fe1688913d7726caaf9837d1544e2ae07b9;hpb=9f9ebe83d2906c9bcb553f86dad16a6cf1be4da8;p=jalview.git

diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java
index 37824fe..3da159f 100755
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -528,7 +528,7 @@ public class UserDefinedColours extends GUserDefinedColours implements
     	}
     }else{
     	for (int i = 0; i < 24; i++){
-    		JButton button = (JButton) upperCaseButtons.get(i);
+    		JButton button = upperCaseButtons.get(i);
     		newColours[i] = button.getBackground();
     	}
     }
@@ -547,7 +547,7 @@ public class UserDefinedColours extends GUserDefinedColours implements
     	  }
       }else{
     	  for (int i = 0; i < 23; i++){
-    		  JButton button = (JButton) lowerCaseButtons.get(i);
+    		  JButton button = lowerCaseButtons.get(i);
     		  newColours[i] = button.getBackground();
     	  }
       }
@@ -556,7 +556,7 @@ public class UserDefinedColours extends GUserDefinedColours implements
 
     if (ap != null)
     {
-      ucs.setThreshold(0, ap.av.getIgnoreGapsConsensus());
+      ucs.setThreshold(0, ap.av.isIgnoreGapsConsensus());
     }
 
     return ucs;