X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FUserDefinedColours.java;h=a8afd43ba49fd21069d9347c66a951a7f3d34519;hb=ddf3aca722d27da4bd2c58e9f0ab0909ba9639c0;hp=d2741a972d122e7487c1e4fdc5e73894672834c3;hpb=b5d69834ef8b11df514d5b4c08c82945f15f8a2e;p=jalview.git

diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java
index d2741a9..a8afd43 100755
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -67,10 +67,6 @@ public class UserDefinedColours extends GUserDefinedColours
     {
         super();
 
-        //AW - LOWER CASE DISABLED IN 2.1.01 bug fix release
-        casePanel.setVisible(false);
-
-
         lcaseColour.setEnabled(false);
 
         this.ap = ap;
@@ -137,9 +133,6 @@ public class UserDefinedColours extends GUserDefinedColours
 
     void resetButtonPanel(boolean caseSensitive)
     {
-      //AW - LOWER CASE DISABLED IN 2.1.01 bug fix release
-      caseSensitive = false;
-
       buttonPanel.removeAll();
 
 
@@ -356,12 +349,10 @@ public class UserDefinedColours extends GUserDefinedColours
           {    }
         }
 
-      /* //AW - LOWER CASE DISABLED IN 2.1.01 bug fix release
         if(caseSensitive.isSelected())
           button.setMargin(new java.awt.Insets(2,2,2,2));
         else
          button.setMargin(new java.awt.Insets(2,14,2,14));
-      */
 
         button.setBackground(col);
         button.setText(label);
@@ -583,7 +574,7 @@ public class UserDefinedColours extends GUserDefinedColours
               }
               else
               {
-                index = ((Integer)ResidueProperties.aaHash.get(name)).intValue();
+                index = ResidueProperties.aaIndex[name.charAt(0)];
               }
               if(index == -1)
                 continue;