X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FUserDefinedColours.java;h=c5562c6c045d75a5dd78e068309cd63d57538c34;hb=e309b8d9bd62fb304fdd612c7385e76027d2f2d7;hp=d7a521c550e64b9ceab1d5ca0c4ae871bcb97916;hpb=ad15cff29620f960119f80176f1fd443da9f6763;p=jalview.git

diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java
index d7a521c..c5562c6 100755
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -528,7 +528,7 @@ public class UserDefinedColours extends GUserDefinedColours implements
     	}
     }else{
     	for (int i = 0; i < 24; i++){
-    		JButton button = (JButton) upperCaseButtons.get(i);
+    		JButton button = upperCaseButtons.get(i);
     		newColours[i] = button.getBackground();
     	}
     }
@@ -547,7 +547,7 @@ public class UserDefinedColours extends GUserDefinedColours implements
     	  }
       }else{
     	  for (int i = 0; i < 23; i++){
-    		  JButton button = (JButton) lowerCaseButtons.get(i);
+    		  JButton button = lowerCaseButtons.get(i);
     		  newColours[i] = button.getBackground();
     	  }
       }
@@ -556,7 +556,7 @@ public class UserDefinedColours extends GUserDefinedColours implements
 
     if (ap != null)
     {
-      ucs.setThreshold(0, ap.av.getIgnoreGapsConsensus());
+      ucs.setThreshold(0, ap.av.isIgnoreGapsConsensus());
     }
 
     return ucs;