X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FVamsasApplication.java;h=03b83cdc1adbabef900f4b649dce6ae640ef461d;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=efd94de08b633823ace20430cba4ff1886c3bc87;hpb=8a6fa9ea9900d0f106529c3f6283e7f9d76dd2cb;p=jalview.git

diff --git a/src/jalview/gui/VamsasApplication.java b/src/jalview/gui/VamsasApplication.java
index efd94de..03b83cd 100644
--- a/src/jalview/gui/VamsasApplication.java
+++ b/src/jalview/gui/VamsasApplication.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -27,6 +27,7 @@ import jalview.structure.SelectionListener;
 import jalview.structure.SelectionSource;
 import jalview.structure.StructureSelectionManager;
 import jalview.structure.VamsasListener;
+import jalview.structure.VamsasSource;
 
 import java.beans.PropertyChangeEvent;
 import java.beans.PropertyChangeListener;
@@ -61,7 +62,7 @@ import uk.ac.vamsas.objects.core.Seg;
  * @author jimp
  * 
  */
-public class VamsasApplication implements SelectionSource
+public class VamsasApplication implements SelectionSource,VamsasSource
 {
   IClient vclient = null;
 
@@ -755,8 +756,8 @@ public class VamsasApplication implements SelectionSource
       {
         final IPickManager pm = vclient.getPickManager();
         final StructureSelectionManager ssm = StructureSelectionManager
-                .getStructureSelectionManager();
-        final SelectionSource me = this;
+                .getStructureSelectionManager(Desktop.instance);
+        final VamsasApplication me = this;
         pm.registerMessageHandler(new IMessageHandler()
         {
           String last = null;
@@ -789,7 +790,7 @@ public class VamsasApplication implements SelectionSource
                 // bound to "+jvobj+" at "+mm.getPosition());
                 // position is character position in aligned sequence
                 ssm.mouseOverVamsasSequence((SequenceI) jvobj,
-                        mm.getPosition());
+                        mm.getPosition(), me);
               }
             }
             if (message instanceof uk.ac.vamsas.client.picking.SelectionMessage)
@@ -957,7 +958,7 @@ public class VamsasApplication implements SelectionSource
 
           int i = -1;
 
-          public void mouseOver(SequenceI seq, int index)
+          public void mouseOver(SequenceI seq, int index, VamsasSource source)
           {
             if (jv2vobj == null)
               return;