X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FVamsasApplication.java;h=764b2563a4d7e77cb373bb4c89945c4ff83956ba;hb=27e20b88d0c73ced06e9c20a6e0fa14e27fed179;hp=cd9a529581b0d4aee1fedab16cbcaa25e88d3c58;hpb=caf13e6a9dc82023cd8648420201e5ad60ce0393;p=jalview.git

diff --git a/src/jalview/gui/VamsasApplication.java b/src/jalview/gui/VamsasApplication.java
index cd9a529..764b256 100644
--- a/src/jalview/gui/VamsasApplication.java
+++ b/src/jalview/gui/VamsasApplication.java
@@ -1,6 +1,6 @@
 /*
- * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
- * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
+ * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
  * 
  * This file is part of Jalview.
  * 
@@ -756,7 +756,7 @@ public class VamsasApplication implements SelectionSource,VamsasSource
       {
         final IPickManager pm = vclient.getPickManager();
         final StructureSelectionManager ssm = StructureSelectionManager
-                .getStructureSelectionManager();
+                .getStructureSelectionManager(Desktop.instance);
         final VamsasApplication me = this;
         pm.registerMessageHandler(new IMessageHandler()
         {
@@ -1021,10 +1021,8 @@ public class VamsasApplication implements SelectionSource,VamsasSource
               {
                 String[] vobj = new String[seqsel.getSize()];
                 int o = 0;
-                Enumeration sels = seqsel.getSequences(null).elements();
-                while (sels.hasMoreElements())
+                for (SequenceI sel:seqsel.getSequences(null))
                 {
-                  SequenceI sel = (SequenceI) sels.nextElement();
                   VorbaId v = (VorbaId) jv2vobj.get(sel);
                   if (v != null)
                   {