X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FVamsasApplication.java;h=973cfe85cccae502f1749a70d6825d6ca6bd7743;hb=c5b363c47e896e47fe5b6d3b64abbdf47bd6f94a;hp=ac72e936279e7cb8a8f1a321cab084b226ef0c46;hpb=4c1ab51e2c08f85ba8c38486adf4a6ce0b0f25c3;p=jalview.git

diff --git a/src/jalview/gui/VamsasApplication.java b/src/jalview/gui/VamsasApplication.java
index ac72e93..973cfe8 100644
--- a/src/jalview/gui/VamsasApplication.java
+++ b/src/jalview/gui/VamsasApplication.java
@@ -1076,7 +1076,7 @@ public class VamsasApplication implements SelectionSource, VamsasSource
                   {
                     Iterator<int[]> intervals = hidden
                             .getVisContigsIterator(seqsel.getStartRes(),
-                                    seqsel.getEndRes() + 1);
+                                    seqsel.getEndRes() + 1, false);
                     while (intervals.hasNext())
                     {
                       int[] region = intervals.next();