X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2FVamsasApplication.java;h=efd94de08b633823ace20430cba4ff1886c3bc87;hb=8a6fa9ea9900d0f106529c3f6283e7f9d76dd2cb;hp=c48c86f460191618f91640d95bab082ae32c2410;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git

diff --git a/src/jalview/gui/VamsasApplication.java b/src/jalview/gui/VamsasApplication.java
index c48c86f..efd94de 100644
--- a/src/jalview/gui/VamsasApplication.java
+++ b/src/jalview/gui/VamsasApplication.java
@@ -222,14 +222,12 @@ public class VamsasApplication implements SelectionSource
     } catch (Error e)
     {
       Cache.log
-              .warn(
-                      "Probable SERIOUS VAMSAS client incompatibility - carrying on regardless",
+              .warn("Probable SERIOUS VAMSAS client incompatibility - carrying on regardless",
                       e);
     } catch (Exception e)
     {
       Cache.log
-              .warn(
-                      "Probable VAMSAS client incompatibility - carrying on regardless",
+              .warn("Probable VAMSAS client incompatibility - carrying on regardless",
                       e);
     }
   }
@@ -241,8 +239,8 @@ public class VamsasApplication implements SelectionSource
    */
   private ClientHandle getJalviewHandle()
   {
-    return new ClientHandle("jalview.bin.Jalview", jalview.bin.Cache
-            .getProperty("VERSION"));
+    return new ClientHandle("jalview.bin.Jalview",
+            jalview.bin.Cache.getProperty("VERSION"));
   }
 
   /**
@@ -305,8 +303,7 @@ public class VamsasApplication implements SelectionSource
     } catch (Exception e)
     {
       Cache.log
-              .warn(
-                      "Exception whilst refreshing jalview windows after a vamsas document update.",
+              .warn("Exception whilst refreshing jalview windows after a vamsas document update.",
                       e);
     }
   }
@@ -791,8 +788,8 @@ public class VamsasApplication implements SelectionSource
                 // Cache.log.debug("Handling Mouse over "+mm.getVorbaID()+"
                 // bound to "+jvobj+" at "+mm.getPosition());
                 // position is character position in aligned sequence
-                ssm.mouseOverVamsasSequence((SequenceI) jvobj, mm
-                        .getPosition());
+                ssm.mouseOverVamsasSequence((SequenceI) jvobj,
+                        mm.getPosition());
               }
             }
             if (message instanceof uk.ac.vamsas.client.picking.SelectionMessage)
@@ -1064,8 +1061,8 @@ public class VamsasApplication implements SelectionSource
                   }
                   else
                   {
-                    int[] intervals = colsel.getVisibleContigs(seqsel
-                            .getStartRes(), seqsel.getEndRes() + 1);
+                    int[] intervals = colsel.getVisibleContigs(
+                            seqsel.getStartRes(), seqsel.getEndRes() + 1);
                     for (int iv = 0; iv < intervals.length; iv += 2)
                     {
                       Seg s = new Seg();