X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fgui%2Fstructurechooser%2FThreeDBStructureChooserQuerySource.java;h=76ef85f85f16d2f3e11b21e76fbeeea499daab8f;hb=f6d1305378fa256a42caf7d284b13d5a084bc471;hp=8b4258f9ab07328a67a5ea9a5a7e2994a42c3423;hpb=07fa97ae1c269df7345e50c31aca1aa0aaa40d91;p=jalview.git

diff --git a/src/jalview/gui/structurechooser/ThreeDBStructureChooserQuerySource.java b/src/jalview/gui/structurechooser/ThreeDBStructureChooserQuerySource.java
index 8b4258f..76ef85f 100644
--- a/src/jalview/gui/structurechooser/ThreeDBStructureChooserQuerySource.java
+++ b/src/jalview/gui/structurechooser/ThreeDBStructureChooserQuerySource.java
@@ -310,7 +310,7 @@ public class ThreeDBStructureChooserQuerySource
             && tdBeaconsFilters.contains(fieldToFilterBy);
   }
 
-  private String remove_prefix(String fieldToFilterBy)
+  protected String remove_prefix(String fieldToFilterBy)
   {
     if (tdBeaconsFilters != null
             && tdBeaconsFilters.contains(fieldToFilterBy)
@@ -453,7 +453,10 @@ public class ThreeDBStructureChooserQuerySource
           pdbEntry.setRetrievalUrl(urlStr);
         }
         pdbEntry.setProvider(typeColumn);
-        pdbEntry.setProviderPage(modelPage);
+        if (modelPage != null)
+        {
+          pdbEntry.setProviderPage(modelPage);
+        }
         selectedSeq.getDatasetSequence().addPDBId(pdbEntry);
       }
       pdbEntriesToView[count++] = pdbEntry;
@@ -546,6 +549,11 @@ public class ThreeDBStructureChooserQuerySource
       try
       {
         resultList = pdbquery.executePDBFTSRestRequest(pdbRequest);
+        if (resultList.getNumberOfItemsFound() == 0)
+        {
+          Console.info("Unexpectedly returned no results for pdbe query: "
+                  + pdb_Query);
+        }
         results.add(resultList);
         lastPdbRequest = pdbRequest;
       } catch (Exception ex)
@@ -579,7 +587,7 @@ public class ThreeDBStructureChooserQuerySource
       {
         if (!hasPdbResp)
         {
-          System.out.println(
+          jalview.bin.Console.outPrintln(
                   "Warning: seems like we couldn't get to the PDBe search interface.");
         }
         else