X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fhmmer%2FHMMBuild.java;fp=src%2Fjalview%2Fhmmer%2FHMMBuild.java;h=b3cca40837827103b34734e634fa609255c22d22;hb=061c304150f3db1f126b2e8e274d3f7da4846887;hp=6fcd6dba727757ceb27232f92a5090943a57c642;hpb=1c02310d08299019905c0c436cd91a41412510ae;p=jalview.git

diff --git a/src/jalview/hmmer/HMMBuild.java b/src/jalview/hmmer/HMMBuild.java
index 6fcd6db..b3cca40 100644
--- a/src/jalview/hmmer/HMMBuild.java
+++ b/src/jalview/hmmer/HMMBuild.java
@@ -196,7 +196,9 @@ public class HMMBuild extends HmmerCommand
           copy.add(seq);
         }
       }
-
+      // TODO rather than copy alignment data we should anonymize in situ -
+      // export/File import could use anonymization hash to reinstate references
+      // at import level ?
       SequenceI[] copyArray = copy.toArray(new SequenceI[copy.size()]);
       Hashtable sequencesHash = stashSequences(copyArray);