X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fhmmer%2FHMMBuild.java;h=0bda090e5cfbedfa8013af9f56c365935677882b;hb=1595128a4bfc730f1e55c347f0a52eb0d491ca92;hp=0c47c1dd8011fc05ef682d1f39fb113439eb94ac;hpb=4576f4f4b7812b69147e2f91e00667f17dc57fed;p=jalview.git

diff --git a/src/jalview/hmmer/HMMBuild.java b/src/jalview/hmmer/HMMBuild.java
index 0c47c1d..0bda090 100644
--- a/src/jalview/hmmer/HMMBuild.java
+++ b/src/jalview/hmmer/HMMBuild.java
@@ -201,6 +201,7 @@ public class HMMBuild extends HmmerCommand
       // at import level ?
 
       SequenceI[] copyArray = copy.toArray(new SequenceI[copy.size()]);
+      // TODO: when copy contains the alignment sequences, you actually see the alignment sequences change to 'Sequence0'... if a redraw occurs!
       Hashtable sequencesHash = stashSequences(copyArray);
 
       exportStockholm(copyArray, alignmentFile, ac);