X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fhmmer%2FHMMBuildThread.java;h=ed074a8f54389788cd67934db291c3639bdb27a1;hb=5b0d4841f42582d761e1a3ec853efbb8be346441;hp=5d55f84710790beed1265e2b77785af928a3a785;hpb=d1f25a5bd328b4f9a47bf98fe85e00209b91e0f2;p=jalview.git

diff --git a/src/jalview/hmmer/HMMBuildThread.java b/src/jalview/hmmer/HMMBuildThread.java
index 5d55f84..ed074a8 100644
--- a/src/jalview/hmmer/HMMBuildThread.java
+++ b/src/jalview/hmmer/HMMBuildThread.java
@@ -149,10 +149,16 @@ public class HMMBuildThread implements Runnable
   
   private boolean runCommand() throws IOException, InterruptedException
   {
-    File file = new File(cmds.HMMERFOLDER + "/binaries/hmmbuild");
+    File file = new File(cmds.HMMERFOLDER + "/hmmbuild");
     if (!file.canExecute())
     {
-      return false;
+      file = new File(cmds.HMMERFOLDER + "/hmmbuild.exe");
+      {
+        if (!file.canExecute())
+        {
+          return false;
+        }
+      }
     }
     String command = cmds.HMMERFOLDER + cmds.HMMBUILD + cmds.NAME;
     if (forGroup)