X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fhmmer%2FHMMSearch.java;h=64802c7dc206053582e22e2d79225d15a630cf8f;hb=79d76d41dc80b2c5a71201f26f832af337b7809f;hp=3faa4f275ff6e4d0a032f100e231708dc73cec9d;hpb=ed581b841fe9361bfe80bb006df190a29df264fb;p=jalview.git

diff --git a/src/jalview/hmmer/HMMSearch.java b/src/jalview/hmmer/HMMSearch.java
index 3faa4f2..64802c7 100644
--- a/src/jalview/hmmer/HMMSearch.java
+++ b/src/jalview/hmmer/HMMSearch.java
@@ -275,11 +275,7 @@ public class HMMSearch extends HmmerCommand
       databaseFile = FileUtils.createTempFile("database", ".sto");
       AlignmentI al = af.getViewport().getAlignment();
       AlignmentI copy = new Alignment(al);
-      List<SequenceI> hmms = copy.getHmmSequences();
-      for (SequenceI hmmSeq : hmms)
-      {
-        copy.deleteSequence(hmmSeq);
-      }
+      deleteHmmSequences(copy);
       exportStockholm(copy.getSequencesArray(), databaseFile, null);
     }