X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fhmmer%2FHMMSearch.java;h=f05823e37b40b843a3d9634db35a16215a87bcd1;hb=72404f561ccd190eab1990874f017bbe94bf9e10;hp=f6706333ef2d5dd44cb72d803de7a070f9d87859;hpb=a3bed79406073da41d03e8278733e4beae172e6e;p=jalview.git

diff --git a/src/jalview/hmmer/HMMSearch.java b/src/jalview/hmmer/HMMSearch.java
index f670633..f05823e 100644
--- a/src/jalview/hmmer/HMMSearch.java
+++ b/src/jalview/hmmer/HMMSearch.java
@@ -157,6 +157,8 @@ public class HMMSearch extends Search
               inputAlignmentTemp.getAbsolutePath(), DataSourceType.FILE));
       seqs = file.getSeqsAsArray();
 
+      readDomainTable(searchOutputFile, false);
+
       if (searchAlignment)
       {
         recoverSequences(sequencesHash, seqs);
@@ -179,7 +181,7 @@ public class HMMSearch extends Search
           }
         }
       }
-      readTable(searchOutputFile);
+
 
       int seqCount = Math.min(seqs.length, seqsToReturn);
       SequenceI[] hmmAndSeqs = new SequenceI[seqCount + 1];