X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAlignFile.java;h=3202ac9f8b067fddcbf26f82e52811390f9fcdf9;hb=3cea1ee2c1c9a2ad0a3b2c76bac165b1b6a3ff2a;hp=889d72ec78dbf97217ff7ca6613e39c6327f7e5c;hpb=892e857760e779796e156b4fa36d97d8d31e73e1;p=jalview.git

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index 889d72e..3202ac9 100755
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -28,7 +28,6 @@ import java.util.List;
 import java.util.Vector;
 
 import jalview.datamodel.AlignmentAnnotation;
-import jalview.datamodel.AlignmentAnnotation.TFType;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.Sequence;
 import jalview.datamodel.SequenceGroup;
@@ -82,13 +81,6 @@ public abstract class AlignFile extends FileParse
 
   private boolean dataClosed = false;
 
-  private AlignmentAnnotation.TFType temperatureFactorType = null;
-
-  public AlignmentAnnotation.TFType getTemperatureFactorType()
-  {
-    return this.temperatureFactorType;
-  }
-
   /**
    * @return if doParse() was called at construction time
    */
@@ -125,13 +117,7 @@ public abstract class AlignFile extends FileParse
   public AlignFile(Object dataObject, DataSourceType sourceType)
           throws IOException
   {
-    this(dataObject, sourceType, null);
-  }
-
-  public AlignFile(Object dataObject, DataSourceType sourceType,
-          AlignmentAnnotation.TFType tempfacType) throws IOException
-  {
-    this(true, dataObject, sourceType, tempfacType);
+    this(true, dataObject, sourceType);
   }
 
   /**
@@ -149,16 +135,9 @@ public abstract class AlignFile extends FileParse
   public AlignFile(boolean parseImmediately, Object dataObject,
           DataSourceType sourceType) throws IOException
   {
-    this(parseImmediately, dataObject, sourceType, null);
-  }
-
-  public AlignFile(boolean parseImmediately, Object dataObject,
-          DataSourceType sourceType, AlignmentAnnotation.TFType tempfacType) throws IOException
-  {
     // BH allows File or String
     super(dataObject, sourceType);
     initData();
-    this.temperatureFactorType = tempfacType;
     if (parseImmediately)
     {
       doParse();