X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAlignFile.java;h=497f0a580836af85016458f6f32c3ecd97adc9a3;hb=6fd29e7e2753c9066fa31b76ab71827f96d471ff;hp=7b1e84ad13580a1efd2244a16de90d92474377f6;hpb=0669bcd76c254141146c1fc2628812c782571c0b;p=jalview.git

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index 7b1e84a..497f0a5 100755
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -75,9 +75,9 @@ public abstract class AlignFile extends FileParse
   /**
    * true if parse() has been called
    */
-  private boolean parseCalled;
+  private boolean parseCalled = false;
 
-  private boolean parseImmediately;
+  private boolean parseImmediately = true;
 
   /**
    * @return if doParse() was called at construction time