X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAlignFile.java;h=ceec54bcf0f384508583fff26806511762c7ab69;hb=4f24ef0848cf3c43ba0467f31fce1baa5c57aad5;hp=f933961b3c6886330bcdc2f2520aa195913cd66f;hpb=55e2e9b22b133db8b9ff0979b0338a33081fc8fd;p=jalview.git

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index f933961..ceec54b 100755
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -135,12 +135,15 @@ public abstract class AlignFile extends FileParse
             if (!jalview.schemes.ResidueProperties.aaHash.containsKey(
                         String.valueOf(sequence.charAt(i))))
             {
+                invalidCharacter = sequence.charAt(i);
                 return false;
             }
 
         return true;
     }
 
+    char invalidCharacter;
+
     /**
      * This method must be implemented to parse the contents of the file.
      */