X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAlignFile.java;h=f933961b3c6886330bcdc2f2520aa195913cd66f;hb=2f1b1f33d31e1b068cea66d66f0bed29a4585cf7;hp=1ec2805c43daa7c53046c90a9356b69565747a19;hpb=820ae6f18432291d846be13bb776de9767b7a8ec;p=jalview.git

diff --git a/src/jalview/io/AlignFile.java b/src/jalview/io/AlignFile.java
index 1ec2805..f933961 100755
--- a/src/jalview/io/AlignFile.java
+++ b/src/jalview/io/AlignFile.java
@@ -39,7 +39,6 @@ public abstract class AlignFile extends FileParse
     Vector headers;
     long start;
     long end;
-    boolean dbPrefix = true;
     boolean jvSuffix = true;
 
     /**
@@ -152,20 +151,13 @@ public abstract class AlignFile extends FileParse
      */
     public abstract String print();
 
-    public void addDBPrefix(boolean b)
-    {
-      dbPrefix = b;
-    }
-
     public void addJVSuffix(boolean b)
     {
       jvSuffix = b;
     }
 
     /**
-     * A general parser for ids. Will look for dbrefs in
-     * Uniprot format source|id
-     * And also Jalview /start-end
+     * A general parser for ids.
      *
      * @String id Id to be parsed
      */
@@ -184,7 +176,6 @@ public abstract class AlignFile extends FileParse
         seq = new Sequence(id, "");
       }
 
-
       return seq;
     }
 
@@ -197,7 +188,7 @@ public abstract class AlignFile extends FileParse
      */
     String printId(SequenceI seq)
     {
-      return seq.getDisplayId(dbPrefix, jvSuffix);
+     return seq.getDisplayId(jvSuffix);
     }
 
 }