X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAlignmentProperties.java;h=37912bef444a8b0cfcd2d1bb324f83a3cc748698;hb=c2128745577234fbee1f276f3db96776e1533d9e;hp=3b25b494020102dc33c9ccaa06fa0bc64f517fee;hpb=a7bbd448b7b2b0888a47af48d70354b7df22ab83;p=jalview.git
diff --git a/src/jalview/io/AlignmentProperties.java b/src/jalview/io/AlignmentProperties.java
index 3b25b49..37912be 100644
--- a/src/jalview/io/AlignmentProperties.java
+++ b/src/jalview/io/AlignmentProperties.java
@@ -1,9 +1,23 @@
-/**
+/*
+ * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1)
+ * Copyright (C) 2014 The Jalview Authors
+ *
+ * This file is part of Jalview.
*
+ * Jalview is free software: you can redistribute it and/or
+ * modify it under the terms of the GNU General Public License
+ * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
+ *
+ * Jalview is distributed in the hope that it will be useful, but
+ * WITHOUT ANY WARRANTY; without even the implied warranty
+ * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
+ * PURPOSE. See the GNU General Public License for more details.
+ *
+ * You should have received a copy of the GNU General Public License along with Jalview. If not, see .
+ * The Jalview Authors are detailed in the 'AUTHORS' file.
*/
package jalview.io;
-import java.io.IOException;
import java.io.StringWriter;
import java.io.PrintWriter;
import java.util.Enumeration;
@@ -13,8 +27,10 @@ import jalview.datamodel.Alignment;
import jalview.datamodel.AlignmentI;
/**
- * Render associated attributes of an alignment. The heart of this code was refactored from jalview.gui.AlignFrame and jalview.appletgui.AlignFrame
- * TODO: consider extending the html renderer to annotate elements with CSS ids enabling finer output format control.
+ * Render associated attributes of an alignment. The heart of this code was
+ * refactored from jalview.gui.AlignFrame and jalview.appletgui.AlignFrame TODO:
+ * consider extending the html renderer to annotate elements with CSS ids
+ * enabling finer output format control.
*
*/
public class AlignmentProperties
@@ -28,12 +44,13 @@ public class AlignmentProperties
/**
* render the alignment's properties report as text or an HTML fragment
+ *
* @param pw
* @param html
*/
public void writeProperties(PrintWriter pw, boolean html)
{
- final String nl = html ? "
" : "\n";
+ final String nl = html ? "
" : System.getProperty("line.separator");
float avg = 0;
int min = Integer.MAX_VALUE, max = 0;
for (int i = 0; i < alignment.getHeight(); i++)
@@ -93,7 +110,7 @@ public class AlignmentProperties
}
else
{
- pw.print("\n" + key + "\t" + vals);
+ pw.print(nl + key + "\t" + vals);
}
}
if (html)