X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAlignmentProperties.java;h=f2a6150dc69dd4254ba9da1f59c6e12dff91368a;hb=08c7bee16c16563cc7cec7ea4d336b3e0c4c937a;hp=38f61cf5223bb525c0c133c658231eb098246b81;hpb=ad20cd92225f2ee8c251d39b00b90555d382a616;p=jalview.git diff --git a/src/jalview/io/AlignmentProperties.java b/src/jalview/io/AlignmentProperties.java index 38f61cf..f2a6150 100644 --- a/src/jalview/io/AlignmentProperties.java +++ b/src/jalview/io/AlignmentProperties.java @@ -1,30 +1,33 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8) - * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. + * as published by the Free Software Foundation, either version 3 + * of the License, or (at your option) any later version. * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * - * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * You should have received a copy of the GNU General Public License + * along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.io; -import java.io.StringWriter; +import jalview.datamodel.Alignment; +import jalview.datamodel.AlignmentI; + import java.io.PrintWriter; +import java.io.StringWriter; import java.util.Enumeration; import java.util.Hashtable; -import jalview.datamodel.Alignment; -import jalview.datamodel.AlignmentI; - /** * Render associated attributes of an alignment. The heart of this code was * refactored from jalview.gui.AlignFrame and jalview.appletgui.AlignFrame TODO: @@ -58,11 +61,15 @@ public class AlignmentProperties - alignment.getSequenceAt(i).getStart(); avg += size; if (size > max) + { max = size; + } if (size < min) + { min = size; + } } - avg = avg / (float) alignment.getHeight(); + avg = avg / alignment.getHeight(); pw.print(nl); pw.print("Sequences: " + alignment.getHeight()); pw.print(nl);