X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAlignmentProperties.java;h=f2a6150dc69dd4254ba9da1f59c6e12dff91368a;hb=2466e94aa67b0559bd5c4c6e17d60b6fac3cb756;hp=88e381429c0ed92cf9871606b138ac7b3af1fded;hpb=ab43013b7e357b84b4abade0dba949668dfb2a0e;p=jalview.git diff --git a/src/jalview/io/AlignmentProperties.java b/src/jalview/io/AlignmentProperties.java index 88e3814..f2a6150 100644 --- a/src/jalview/io/AlignmentProperties.java +++ b/src/jalview/io/AlignmentProperties.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2b1) - * Copyright (C) 2014 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -20,14 +20,14 @@ */ package jalview.io; -import java.io.StringWriter; +import jalview.datamodel.Alignment; +import jalview.datamodel.AlignmentI; + import java.io.PrintWriter; +import java.io.StringWriter; import java.util.Enumeration; import java.util.Hashtable; -import jalview.datamodel.Alignment; -import jalview.datamodel.AlignmentI; - /** * Render associated attributes of an alignment. The heart of this code was * refactored from jalview.gui.AlignFrame and jalview.appletgui.AlignFrame TODO: @@ -61,11 +61,15 @@ public class AlignmentProperties - alignment.getSequenceAt(i).getStart(); avg += size; if (size > max) + { max = size; + } if (size < min) + { min = size; + } } - avg = avg / (float) alignment.getHeight(); + avg = avg / alignment.getHeight(); pw.print(nl); pw.print("Sequences: " + alignment.getHeight()); pw.print(nl);