X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAnnotationFile.java;h=0042141f2b2da1554c27c8896b8370225d58fee8;hb=4231d40261fef32ce4570a6bbad0d35df44e8baf;hp=8706ad5d3154443552e74ecfb840bfbfef1e0058;hpb=c07eb2c5794833bd0241000d6844d783fe10cb82;p=jalview.git

diff --git a/src/jalview/io/AnnotationFile.java b/src/jalview/io/AnnotationFile.java
index 8706ad5..0042141 100755
--- a/src/jalview/io/AnnotationFile.java
+++ b/src/jalview/io/AnnotationFile.java
@@ -30,6 +30,7 @@ import jalview.datamodel.GraphLine;
 import jalview.datamodel.HiddenSequences;
 import jalview.datamodel.SequenceGroup;
 import jalview.datamodel.SequenceI;
+import jalview.jsdev.GenericFileAdapter;
 import jalview.schemes.ColourSchemeI;
 import jalview.schemes.ColourSchemeProperty;
 import jalview.schemes.ResidueProperties;
@@ -38,10 +39,8 @@ import jalview.util.Comparison;
 import jalview.util.Format;
 
 import java.io.BufferedReader;
-import java.io.FileReader;
 import java.io.InputStreamReader;
 import java.io.StringReader;
-import java.net.URL;
 import java.util.ArrayList;
 import java.util.BitSet;
 import java.util.Enumeration;
@@ -694,12 +693,11 @@ public class AnnotationFile
     {
       if (protocol.equals(AppletFormatAdapter.FILE))
       {
-        in = new BufferedReader(new FileReader(file));
+      	in = GenericFileAdapter.getReader(file, false);
       }
       else if (protocol.equals(AppletFormatAdapter.URL))
       {
-        URL url = new URL(file);
-        in = new BufferedReader(new InputStreamReader(url.openStream()));
+      	in = GenericFileAdapter.getReader(file, true);
       }
       else if (protocol.equals(AppletFormatAdapter.PASTE))
       {
@@ -710,7 +708,7 @@ public class AnnotationFile
         java.io.InputStream is = getClass().getResourceAsStream("/" + file);
         if (is != null)
         {
-          in = new BufferedReader(new java.io.InputStreamReader(is));
+          in = new BufferedReader(new InputStreamReader(is));
         }
       }
       if (in != null)