X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAppletFormatAdapter.java;fp=src%2Fjalview%2Fio%2FAppletFormatAdapter.java;h=2362010dbd073f50f363dc59ba8017f06c8b473b;hb=f14071cd4c32feeacdb6d4638ef4e3b52071f2f3;hp=5e209e6569970c260d95410ebd1c853e4b0a37b0;hpb=63f0dcf0574ae6652c5f8f2bbf7750acef5baf00;p=jalview.git

diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java
index 5e209e6..2362010 100755
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -26,6 +26,7 @@ import jalview.datamodel.Alignment;
 import jalview.datamodel.AlignmentAnnotation;
 import jalview.datamodel.AlignmentI;
 import jalview.datamodel.AlignmentView;
+import jalview.datamodel.SeqDistanceContactMatrix;
 import jalview.datamodel.PDBEntry.Type;
 import jalview.datamodel.SequenceI;
 import jalview.ext.jmol.JmolParser;
@@ -317,6 +318,8 @@ public class AppletFormatAdapter
 
     alignFile.addGroups(al);
 
+    al.addContactList(new SeqDistanceContactMatrix(al.getWidth()));
+
     return al;
   }