X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAppletFormatAdapter.java;h=5f228fb79e3bd7711952f60393a39f3e224196e4;hb=4f24ef0848cf3c43ba0467f31fce1baa5c57aad5;hp=5f738981a3c2bd630ba45bd1306660ab5ff6fc1d;hpb=1c472d54a12783c4be933b83d47217b7d56b167f;p=jalview.git

diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java
index 5f73898..5f228fb 100755
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -100,7 +100,11 @@
                 {
                     afile = new PfamFile(inFile, type);
                 }
-
+                else if (format.equals("JnetFile"))
+                {
+                  afile = new JPredFile(inFile, type);
+                  ((JPredFile)afile).removeNonSequences();
+                }
 
                 return afile.getSeqsAsArray();
             }