X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAppletFormatAdapter.java;h=9a4e9823ce1999d4054e8447502679f7d3c4a81d;hb=d4271d32477e99e9fbbfa5db3e11f1b79324e60d;hp=60eb9ccd4d2360839bd3628a9a574db048f63e16;hpb=34ce5193c8766085422c32544246d92f12d0c975;p=jalview.git

diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java
index 60eb9cc..9a4e982 100755
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -36,7 +36,6 @@ import jalview.datamodel.PDBEntry.Type;
 import jalview.datamodel.SequenceI;
 import jalview.ext.jmol.JmolParser;
 import jalview.structure.StructureImportSettings;
-import jalview.structure.StructureImportSettings.TFType;
 import jalview.util.Platform;
 
 /**
@@ -168,11 +167,7 @@ public class AppletFormatAdapter
   {
 
     this.selectedFile = selectedFile;
-    if (selectedFile != null)
-    {
-      this.inFile = selectedFile.getPath();
-    }
-    this.inFile = file;
+    this.inFile = selectedFile != null ? selectedFile.getPath() : file;
     try
     {
       if (fileFormat.isStructureFile())
@@ -184,12 +179,16 @@ public class AppletFormatAdapter
                         .toString());
         StructureImportSettings.addSettings(annotFromStructure,
                 localSecondaryStruct, serviceSecondaryStruct);
+        if (tempfacType != null)
+        {
+          StructureImportSettings.setTemperatureFactorType(tempfacType);
+        }
         if (isParseWithJMOL)
         {
           // needs a File option
           alignFile = new JmolParser(
                   selectedFile == null ? inFile : selectedFile, sourceType,
-                  tempfacType);
+                  StructureImportSettings.getTemperatureFactorType());
         }
         else
         {