X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FAppletFormatAdapter.java;h=df432cc8a048edcd7137e30d906a880c7935d28a;hb=926ee6187d8e73242042bf6d77a01a6d15d84a62;hp=d7587c5ef68b91c6d11cc70de23c8b5b1a857dcb;hpb=9dee46fd31f98c240f7cc20c5451502286dc71f6;p=jalview.git

diff --git a/src/jalview/io/AppletFormatAdapter.java b/src/jalview/io/AppletFormatAdapter.java
index d7587c5..df432cc 100755
--- a/src/jalview/io/AppletFormatAdapter.java
+++ b/src/jalview/io/AppletFormatAdapter.java
@@ -31,16 +31,16 @@ public class AppletFormatAdapter
   /** DOCUMENT ME!! */
   public static final String[] READABLE_FORMATS = new String[]
       {
-      "BLC", "CLUSTAL", "FASTA", "MSF", "PileUp", "PIR", "PFAM", "STH", "PDB"
+      "BLC", "CLUSTAL", "FASTA", "MSF", "PileUp", "PIR", "PFAM", "STH", "PDB", "JnetFile"
   };
 
   public static final String[] WRITEABLE_FORMATS = new String[]
       {
-      "BLC", "CLUSTAL", "FASTA", "MSF", "PileUp", "PIR", "PFAM" //, "AMSA"
+      "BLC", "CLUSTAL", "FASTA", "MSF", "PileUp", "PIR", "PFAM" , "AMSA"
   };
 
   public static String INVALID_CHARACTERS = "Contains invalid characters";
-
+  // TODO: make these messages dynamic
   public static String SUPPORTED_FORMATS = "Formats currently supported are\n" +
       "Fasta, MSF, Clustal, BLC, PIR, MSP, and PFAM";
 
@@ -218,9 +218,11 @@ public class AppletFormatAdapter
       {
         afile = new StockholmFile();
       }
-      else if (format.equals("AMSA"))
+      else if (format.equalsIgnoreCase("AMSA"))
       {
         afile = new AMSAFile(alignment);
+      } else {
+        throw new Exception("Implementation error: Unknown file format string");
       }
 
       afile.addJVSuffix(jvsuffix);