X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FBLCFile.java;h=6317e83c5913ce941ba85365800e5eaffdfd95dd;hb=4d890895e6aabfc36d45d3b53781ee2cf5cfafdc;hp=c7cf2d68f7056967bb26857fceeb5b8deddaeed2;hpb=3412b273e964fb1a9d22564b04a5f0c827ec2461;p=jalview.git

diff --git a/src/jalview/io/BLCFile.java b/src/jalview/io/BLCFile.java
index c7cf2d6..6317e83 100755
--- a/src/jalview/io/BLCFile.java
+++ b/src/jalview/io/BLCFile.java
@@ -48,15 +48,16 @@ public class BLCFile extends AlignFile
    * 
    * @param inFile
    *          DOCUMENT ME!
-   * @param type
+   * @param sourceType
    *          DOCUMENT ME!
    * 
    * @throws IOException
    *           DOCUMENT ME!
    */
-  public BLCFile(String inFile, String type) throws IOException
+  public BLCFile(String inFile, DataSourceType sourceType)
+          throws IOException
   {
-    super(inFile, type);
+    super(inFile, sourceType);
   }
 
   public BLCFile(FileParse source) throws IOException
@@ -67,6 +68,7 @@ public class BLCFile extends AlignFile
   /**
    * DOCUMENT ME!
    */
+  @Override
   public void initData()
   {
     super.initData();
@@ -89,6 +91,7 @@ public class BLCFile extends AlignFile
   /**
    * DOCUMENT ME!
    */
+  @Override
   public void parse() throws IOException
   {
     StringBuffer headerLines = new StringBuffer();
@@ -153,7 +156,7 @@ public class BLCFile extends AlignFile
         }
       } while (!idsFound);
       if (line == null)
-       {
+      {
         break; // end of file.
       }
       int starCol = line.indexOf("*");
@@ -215,22 +218,13 @@ public class BLCFile extends AlignFile
   /**
    * DOCUMENT ME!
    * 
-   * @return DOCUMENT ME!
-   */
-  public String print()
-  {
-    return print(getSeqsAsArray());
-  }
-
-  /**
-   * DOCUMENT ME!
-   * 
    * @param s
    *          DOCUMENT ME!
    * 
    * @return DOCUMENT ME!
    */
-  public String print(SequenceI[] s)
+  @Override
+  public String print(SequenceI[] s, boolean jvsuffix)
   {
     StringBuffer out = new StringBuffer();
     /**
@@ -244,7 +238,7 @@ public class BLCFile extends AlignFile
 
     while ((i < s.length) && (s[i] != null))
     {
-      out.append(">" + printId(s[i]));
+      out.append(">" + printId(s[i], jvsuffix));
       if (s[i].getDescription() != null)
       {
         out.append(" " + s[i].getDescription());