X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FBLCFile.java;h=7b080a4f4ab00e4d0551fc9e2440132b41d2e469;hb=a45774ee31d9f35d4eff46d54d7deab719afb092;hp=c9960be0b89bd1d2c7e74be787576dab2403b875;hpb=d423f22792e47dbc800ae220a58677f988971d06;p=jalview.git diff --git a/src/jalview/io/BLCFile.java b/src/jalview/io/BLCFile.java index c9960be..7b080a4 100755 --- a/src/jalview/io/BLCFile.java +++ b/src/jalview/io/BLCFile.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7) + * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle * * This file is part of Jalview. * @@ -142,7 +142,7 @@ public class BLCFile extends AlignFile { // header lines - keep them for the alignment comments. headerLines.append(line); - headerLines.append("\n"); + headerLines.append(newline); numHeaderLines++; } } while (!idsFound); @@ -240,7 +240,7 @@ public class BLCFile extends AlignFile out.append(" " + s[i].getDescription()); } - out.append("\n"); + out.append(newline); if (s[i].getSequence().length > max) { @@ -250,7 +250,8 @@ public class BLCFile extends AlignFile i++; } - out.append("* iteration 1\n"); + out.append("* iteration 1"); + out.append(newline); for (int j = 0; j < max; j++) { @@ -270,10 +271,11 @@ public class BLCFile extends AlignFile i++; } - out.append("\n"); + out.append(newline); } - out.append("*\n"); + out.append("*"); + out.append(newline); return out.toString(); }