X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FBLCFile.java;h=b95cf1fad0f253155dafe2f24fe66da6d1ebb50c;hb=35a66e003e7fc9ef05d963a0a310d279b4e1e161;hp=d0eb80ec8ee94db11ee41bb014bba76efed83fe8;hpb=153dd62dc91da13ae732600e6ea55ddbe15eab39;p=jalview.git diff --git a/src/jalview/io/BLCFile.java b/src/jalview/io/BLCFile.java index d0eb80e..b95cf1f 100755 --- a/src/jalview/io/BLCFile.java +++ b/src/jalview/io/BLCFile.java @@ -1,19 +1,20 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6) - * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.0b1) + * Copyright (C) 2014 The Jalview Authors * * This file is part of Jalview. * * Jalview is free software: you can redistribute it and/or * modify it under the terms of the GNU General Public License * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. - * + * * Jalview is distributed in the hope that it will be useful, but * WITHOUT ANY WARRANTY; without even the implied warranty * of MERCHANTABILITY or FITNESS FOR A PARTICULAR * PURPOSE. See the GNU General Public License for more details. * * You should have received a copy of the GNU General Public License along with Jalview. If not, see . + * The Jalview Authors are detailed in the 'AUTHORS' file. */ package jalview.io; @@ -142,7 +143,7 @@ public class BLCFile extends AlignFile { // header lines - keep them for the alignment comments. headerLines.append(line); - headerLines.append("\n"); + headerLines.append(newline); numHeaderLines++; } } while (!idsFound); @@ -240,7 +241,7 @@ public class BLCFile extends AlignFile out.append(" " + s[i].getDescription()); } - out.append("\n"); + out.append(newline); if (s[i].getSequence().length > max) { @@ -250,7 +251,8 @@ public class BLCFile extends AlignFile i++; } - out.append("* iteration 1\n"); + out.append("* iteration 1"); + out.append(newline); for (int j = 0; j < max; j++) { @@ -270,10 +272,11 @@ public class BLCFile extends AlignFile i++; } - out.append("\n"); + out.append(newline); } - out.append("*\n"); + out.append("*"); + out.append(newline); return out.toString(); }