X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FBLCFile.java;h=c9960be0b89bd1d2c7e74be787576dab2403b875;hb=1d534b200f4a912f02f869c9d860f462511ea46f;hp=9b5b3e56ed095cc1a16d7a27f35ac8fb9ad33509;hpb=506d60f0e188723ddc91c26824b41ac7034df3fe;p=jalview.git diff --git a/src/jalview/io/BLCFile.java b/src/jalview/io/BLCFile.java index 9b5b3e5..c9960be 100755 --- a/src/jalview/io/BLCFile.java +++ b/src/jalview/io/BLCFile.java @@ -1,20 +1,19 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4) - * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle + * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5) + * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle * - * This program is free software; you can redistribute it and/or - * modify it under the terms of the GNU General Public License - * as published by the Free Software Foundation; either version 2 - * of the License, or (at your option) any later version. + * This file is part of Jalview. * - * This program is distributed in the hope that it will be useful, - * but WITHOUT ANY WARRANTY; without even the implied warranty of - * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the - * GNU General Public License for more details. + * Jalview is free software: you can redistribute it and/or + * modify it under the terms of the GNU General Public License + * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version. * - * You should have received a copy of the GNU General Public License - * along with this program; if not, write to the Free Software - * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA + * Jalview is distributed in the hope that it will be useful, but + * WITHOUT ANY WARRANTY; without even the implied warranty + * of MERCHANTABILITY or FITNESS FOR A PARTICULAR + * PURPOSE. See the GNU General Public License for more details. + * + * You should have received a copy of the GNU General Public License along with Jalview. If not, see . */ package jalview.io; @@ -44,12 +43,12 @@ public class BLCFile extends AlignFile * Creates a new BLCFile object. * * @param inFile - * DOCUMENT ME! + * DOCUMENT ME! * @param type - * DOCUMENT ME! + * DOCUMENT ME! * * @throws IOException - * DOCUMENT ME! + * DOCUMENT ME! */ public BLCFile(String inFile, String type) throws IOException { @@ -197,7 +196,7 @@ public class BLCFile extends AlignFile if (seqs.size() > 0) { if (headerLines.length() > 1 + numHeaderLines) // could see if buffer is - // just whitespace or not. + // just whitespace or not. setAlignmentProperty("Comments", headerLines.toString()); setAlignmentProperty("iteration", "" + iterationCount); } @@ -217,7 +216,7 @@ public class BLCFile extends AlignFile * DOCUMENT ME! * * @param s - * DOCUMENT ME! + * DOCUMENT ME! * * @return DOCUMENT ME! */