X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FBioJsHTMLOutput.java;h=0ebebc2670bf021eba053ba01b4dcedcc978806c;hb=ee198b3ca3687f18a2ee186f4e7c7330f4ea30f0;hp=f8fa1f5d90d33ad7b6181b8f36ed58268f6f38f6;hpb=25217bbd06c4435ad995fd8ddf3620c3b1d68cd3;p=jalview.git diff --git a/src/jalview/io/BioJsHTMLOutput.java b/src/jalview/io/BioJsHTMLOutput.java index f8fa1f5..0ebebc2 100644 --- a/src/jalview/io/BioJsHTMLOutput.java +++ b/src/jalview/io/BioJsHTMLOutput.java @@ -24,6 +24,7 @@ import jalview.api.AlignExportSettingI; import jalview.api.AlignmentViewPanel; import jalview.datamodel.AlignmentExportData; import jalview.exceptions.NoFileSelectedException; +import jalview.gui.AlignFrame; import jalview.gui.IProgressIndicator; import jalview.gui.OOMWarning; import jalview.json.binding.biojs.BioJSReleasePojo; @@ -125,11 +126,11 @@ public class BioJsHTMLOutput } }; - AlignmentExportData exportData = jalview.gui.AlignFrame - .getAlignmentForExport(JSONFile.FILE_DESC, + AlignmentExportData exportData = AlignFrame + .getAlignmentForExport(FileFormat.Json, ap.getAlignViewport(), exportSettings); String bioJSON = new FormatAdapter(ap, exportData.getSettings()) - .formatSequences(JSONFile.FILE_DESC, exportData + .formatSequences(FileFormat.Json, exportData .getAlignment(), exportData.getOmitHidden(), exportData.getStartEndPostions(), ap .getAlignViewport().getColumnSelection());