X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FBioJsHTMLOutput.java;h=ad3b79f5bde5c7557834cfb4848f8778e413673b;hb=330289271fe2239a59fa318d6b2b19fdd319f8a4;hp=163f3113e03e4de6c137aae2c50e9d6e3dd05324;hpb=2273eba5668e5340354da60fed329c6c716cc439;p=jalview.git diff --git a/src/jalview/io/BioJsHTMLOutput.java b/src/jalview/io/BioJsHTMLOutput.java index 163f311..ad3b79f 100644 --- a/src/jalview/io/BioJsHTMLOutput.java +++ b/src/jalview/io/BioJsHTMLOutput.java @@ -5,7 +5,6 @@ import jalview.datamodel.AlignmentI; import jalview.datamodel.SequenceFeature; import jalview.datamodel.SequenceI; import jalview.exceptions.NoFileSelectedException; -import jalview.gui.AlignViewport; import jalview.gui.AlignmentPanel; import jalview.gui.FeatureRenderer; import jalview.json.binding.v1.BioJsAlignmentPojo; @@ -13,6 +12,7 @@ import jalview.json.binding.v1.BioJsFeaturePojo; import jalview.json.binding.v1.BioJsSeqPojo; import jalview.schemes.ColourSchemeProperty; import jalview.util.MessageManager; +import jalview.viewmodel.AlignmentViewport; import java.awt.Color; import java.io.BufferedReader; @@ -26,7 +26,7 @@ import com.json.JSONException; public class BioJsHTMLOutput { - private AlignViewport av; + private AlignmentViewport av; private jalview.api.FeatureRenderer fr; @@ -53,9 +53,7 @@ public class BioJsHTMLOutput .getGlobalColourScheme()); this.fr = ap.cloneFeatureRenderer(); displayedFeatures = av.getFeaturesDisplayed(); - - exportJalviewAlignmentAsBioJsHtmlFile(); - } + } } private void exportJalviewAlignmentAsBioJsHtmlFile()