X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FClustalFile.java;fp=src%2Fjalview%2Fio%2FClustalFile.java;h=a71e6e867071fbc57fd973a3096734e1eaeab4b2;hb=b122ba188c2ffcbb302809bafc02058e355643ee;hp=afb2009e7ca241d7e6e870cb0bdddc1bfcf478fe;hpb=e91b3bef83f320e13c59ad5d21d69f0abf3d7507;p=jalview.git

diff --git a/src/jalview/io/ClustalFile.java b/src/jalview/io/ClustalFile.java
index afb2009..a71e6e8 100755
--- a/src/jalview/io/ClustalFile.java
+++ b/src/jalview/io/ClustalFile.java
@@ -140,7 +140,7 @@ public class ClustalFile extends AlignFile
       }
     } catch (IOException e)
     {
-      System.err.println("Exception parsing clustal file " + e);
+      jalview.bin.Console.errPrintln("Exception parsing clustal file " + e);
       e.printStackTrace();
     }
 
@@ -168,7 +168,7 @@ public class ClustalFile extends AlignFile
         }
         else
         {
-          System.err.println("Clustal File Reader: Can't find sequence for "
+          jalview.bin.Console.errPrintln("Clustal File Reader: Can't find sequence for "
                   + headers.elementAt(i));
         }
       }