X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FClustalFile.java;h=5d7be8c52a9ba25275a8559fec5799b099cb6b4b;hb=ff385fde554b8fe517dbb734ca687ef7552f2350;hp=90c22f98b43f4211b87d80322f851e3f4268569b;hpb=558597672640984d936ea22409a674293192a09c;p=jalview.git

diff --git a/src/jalview/io/ClustalFile.java b/src/jalview/io/ClustalFile.java
index 90c22f9..5d7be8c 100755
--- a/src/jalview/io/ClustalFile.java
+++ b/src/jalview/io/ClustalFile.java
@@ -1,6 +1,6 @@
 /*
  * Jalview - A Sequence Alignment Editor and Viewer
- * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
+ * Copyright (C) 2007 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
  *
  * This program is free software; you can redistribute it and/or
  * modify it under the terms of the GNU General Public License
@@ -43,7 +43,8 @@ public class ClustalFile
     super.initData();
   }
 
-  public void parse() throws IOException
+  public void parse()
+      throws IOException
   {
     int i = 0;
     boolean flag = false;
@@ -97,7 +98,9 @@ public class ClustalFile
             }
           }
           else
+          {
             flag = true;
+          }
         }
       }
     }
@@ -124,7 +127,8 @@ public class ClustalFile
           }
 
           Sequence newSeq = parseId(headers.elementAt(i).toString());
-          newSeq.setSequence( seqhash.get(headers.elementAt(i).toString()).toString() );
+          newSeq.setSequence(seqhash.get(headers.elementAt(i).toString()).
+                             toString());
 
           seqs.addElement(newSeq);
         }
@@ -185,7 +189,7 @@ public class ClustalFile
 
       while ( (j < s.length) && (s[j] != null))
       {
-        out.append(new Format("%-" + maxid + "s").form( printId(s[j]) + " "));
+        out.append(new Format("%-" + maxid + "s").form(printId(s[j]) + " "));
 
         int start = i * len;
         int end = start + len;