X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FClustalFile.java;h=afb2009e7ca241d7e6e870cb0bdddc1bfcf478fe;hb=2d2853c51b3fd43918112e4f9a65bdcdcc2e43a5;hp=a37afd9689eeac0d07cc23379bec7300a9d4680d;hpb=27cc4ae38ba352502c07a14e8c73ba84664825e3;p=jalview.git

diff --git a/src/jalview/io/ClustalFile.java b/src/jalview/io/ClustalFile.java
index a37afd9..afb2009 100755
--- a/src/jalview/io/ClustalFile.java
+++ b/src/jalview/io/ClustalFile.java
@@ -77,7 +77,9 @@ public class ClustalFile extends AlignFile
         {
           top = true;
         }
-        if (line.indexOf(" ") != 0)
+        boolean isConservation = line.startsWith(SPACE)
+                || line.startsWith(TAB);
+        if (!isConservation)
         {
           str = new StringTokenizer(line);