X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FClustalFile.java;h=b6f36e808456235640ed6c9c08c811f3b48164d0;hb=3fdc889794e3566af57628f0b6a308eb23886f96;hp=afb2009e7ca241d7e6e870cb0bdddc1bfcf478fe;hpb=acf9118bba86938c8406e7041b4e5a507f4f37a3;p=jalview.git

diff --git a/src/jalview/io/ClustalFile.java b/src/jalview/io/ClustalFile.java
index afb2009..b6f36e8 100755
--- a/src/jalview/io/ClustalFile.java
+++ b/src/jalview/io/ClustalFile.java
@@ -140,7 +140,7 @@ public class ClustalFile extends AlignFile
       }
     } catch (IOException e)
     {
-      System.err.println("Exception parsing clustal file " + e);
+      jalview.bin.Console.errPrintln("Exception parsing clustal file " + e);
       e.printStackTrace();
     }
 
@@ -168,8 +168,9 @@ public class ClustalFile extends AlignFile
         }
         else
         {
-          System.err.println("Clustal File Reader: Can't find sequence for "
-                  + headers.elementAt(i));
+          jalview.bin.Console.errPrintln(
+                  "Clustal File Reader: Can't find sequence for "
+                          + headers.elementAt(i));
         }
       }
       AlignmentAnnotation lastssa = null;