X-Git-Url: http://source.jalview.org/gitweb/?a=blobdiff_plain;f=src%2Fjalview%2Fio%2FClustalFile.java;h=f7a45ded35de59eda6c075784c252adb48536527;hb=608282e79f4dd02c92565235b7946265bdca847d;hp=41fe12b29d239d653e032ebd0ac66d82e41c412c;hpb=838e4f91d4a53dd315640dbc9ff6ef7a815ee576;p=jalview.git diff --git a/src/jalview/io/ClustalFile.java b/src/jalview/io/ClustalFile.java index 41fe12b..f7a45de 100755 --- a/src/jalview/io/ClustalFile.java +++ b/src/jalview/io/ClustalFile.java @@ -1,6 +1,6 @@ /* - * Jalview - A Sequence Alignment Editor and Viewer (Version 2.9.0b1) - * Copyright (C) 2015 The Jalview Authors + * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$) + * Copyright (C) $$Year-Rel$$ The Jalview Authors * * This file is part of Jalview. * @@ -47,11 +47,13 @@ public class ClustalFile extends AlignFile super(source); } + @Override public void initData() { super.initData(); } + @Override public void parse() throws IOException { int i = 0; @@ -193,6 +195,7 @@ public class ClustalFile extends AlignFile } } + @Override public String print() { return print(getSeqsAsArray()); @@ -233,7 +236,7 @@ public class ClustalFile extends AlignFile maxid++; int len = 60; - int nochunks = (max / len) + 1; + int nochunks = (max / len) + (max % len > 0 ? 1 : 0); for (i = 0; i < nochunks; i++) {